Analysis of interatomic Contacts of Structural Units in PDB entry:
4K2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4K2M entry

There are 2 chains in PDB entry 4K2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1GLY 440
B
 MET 1ILE 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 4K2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
35 37Right-handed 310
Helix 3
3
A
38 45Right-handed alpha
Helix 4
4
A
50 55Right-handed alpha
Helix 5
5
A
71 76Right-handed 310
Helix 6
6
A
77 92Right-handed alpha
Helix 7
7
A
93 95Right-handed 310
Helix 8
8
A
100 115Right-handed alpha
Helix 9
9
A
124 136Right-handed alpha
Helix 10
10
A
152 162Right-handed alpha
Helix 11
11
A
178 186Right-handed 310
Helix 12
12
A
197 201Right-handed 310
Helix 13
13
A
204 216Right-handed alpha
Helix 14
14
A
262 274Right-handed alpha
Helix 15
15
A
296 307Right-handed alpha
Helix 16
16
A
309 328Right-handed alpha
Helix 17
17
A
328 334Right-handed alpha
Helix 18
18
A
359 372Right-handed alpha
Helix 19
19
A
382 386Right-handed 310
Helix 20
20
A
388 395Right-handed alpha
Helix 21
21
A
400 409Right-handed alpha
Helix 22
22
A
420 440Right-handed alpha
Helix 23
23
B
10 22Right-handed alpha
Helix 24
24
B
35 39Right-handed 310
Helix 25
25
B
40 45Right-handed alpha
Helix 26
26
B
50 55Right-handed alpha
Helix 27
27
B
71 75Right-handed 310
Helix 28
28
B
77 92Right-handed alpha
Helix 29
29
B
93 95Right-handed 310
Helix 30
30
B
100 115Right-handed alpha
Helix 31
31
B
124 136Right-handed alpha
Helix 32
32
B
152 161Right-handed alpha
Helix 33
33
B
178 186Right-handed 310
Helix 34
34
B
197 201Right-handed 310
Helix 35
35
B
204 215Right-handed alpha
Helix 36
36
B
262 274Right-handed alpha
Helix 37
37
B
296 307Right-handed alpha
Helix 38
38
B
309 328Right-handed alpha
Helix 39
39
B
328 334Right-handed alpha
Helix 40
40
B
359 372Right-handed alpha
Helix 41
41
B
382 386Right-handed 310
Helix 42
42
B
388 395Right-handed alpha
Helix 43
43
B
400 409Right-handed alpha
Helix 44
44
B
420 439Right-handed alpha
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There are 6 sheets in PDB entry 4K2M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
30 32parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
256 260anti-parallel
Strand 3
A
238 242anti-parallel
Strand 4
A
218 222parallel
Strand 5
A
190 193parallel
Strand 6
A
143 146parallel
Strand 7
A
164 167parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 354first strand
Strand 2
A
410 413anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
29 32parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
256 260anti-parallel
Strand 3
B
238 242anti-parallel
Strand 4
B
218 222parallel
Strand 5
B
190 193parallel
Strand 6
B
143 146parallel
Strand 7
B
164 167parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 354first strand
Strand 2
B
410 413anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il