Analysis of interatomic Contacts of Structural Units in PDB entry:
4K4Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4K4Z entry

There are 16 chains in PDB entry 4K4Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PHE 462
B
 C 596 A 612
C
 G 689 A 701
D
 G 1 G 2
E
 GLY 1PHE 462
F
 U 595 A 612
G
 G 689 A 701
I
 GLY 1PHE 462
J
 U 595 A 612
K
 G 689 A 701
L
 G 1 A 3
M
 GLY 1PHE 462
N
 C 596 A 612
H
 G 1 G 4
O
 G 689 A 701
P
 G 1 A 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 92 helices in PDB entry 4K4Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 59Right-handed alpha
Helix 2
2
A
71 87Right-handed alpha
Helix 3
3
A
96 103Right-handed alpha
Helix 4
4
A
119 123Right-handed 310
Helix 5
5
A
126 130Right-handed 310
Helix 6
6
A
138 149Right-handed alpha
Helix 7
7
A
165 170Right-handed alpha
Helix 8
8
A
180 201Right-handed alpha
Helix 9
9
A
213 218Right-handed alpha
Helix 10
10
A
220 225Right-handed alpha
Helix 11
11
A
236 241Right-handed alpha
Helix 12
12
A
242 257Right-handed alpha
Helix 13
13
A
259 270Right-handed alpha
Helix 14
14
A
293 314Right-handed alpha
Helix 15
15
A
318 322Right-handed 310
Helix 16
16
A
340 351Right-handed alpha
Helix 17
17
A
359 361Right-handed 310
Helix 18
18
A
394 403Right-handed alpha
Helix 19
19
A
407 409Right-handed 310
Helix 20
20
A
410 423Right-handed alpha
Helix 21
21
A
426 438Right-handed alpha
Helix 22
22
A
439 446Right-handed 310
Helix 23
23
A
450 462Right-handed alpha
Helix 24
24
E
53 60Right-handed alpha
Helix 25
25
E
71 87Right-handed alpha
Helix 26
26
E
96 103Right-handed alpha
Helix 27
27
E
119 123Right-handed 310
Helix 28
28
E
126 130Right-handed 310
Helix 29
29
E
138 149Right-handed alpha
Helix 30
30
E
165 170Right-handed alpha
Helix 31
31
E
180 201Right-handed alpha
Helix 32
32
E
213 218Right-handed alpha
Helix 33
33
E
220 225Right-handed alpha
Helix 34
34
E
236 241Right-handed alpha
Helix 35
35
E
242 257Right-handed alpha
Helix 36
36
E
259 264Right-handed alpha
Helix 37
37
E
266 270Right-handed alpha
Helix 38
38
E
293 314Right-handed alpha
Helix 39
39
E
318 322Right-handed 310
Helix 40
40
E
340 351Right-handed alpha
Helix 41
41
E
359 361Right-handed 310
Helix 42
42
E
394 403Right-handed alpha
Helix 43
43
E
407 409Right-handed 310
Helix 44
44
E
410 423Right-handed alpha
Helix 45
45
E
426 438Right-handed alpha
Helix 46
46
E
439 446Right-handed 310
Helix 47
47
E
450 462Right-handed alpha
Helix 48
48
I
53 60Right-handed alpha
Helix 49
49
I
71 87Right-handed alpha
Helix 50
50
I
96 103Right-handed alpha
Helix 51
51
I
119 123Right-handed 310
Helix 52
52
I
126 130Right-handed 310
Helix 53
53
I
138 149Right-handed alpha
Helix 54
54
I
165 170Right-handed alpha
Helix 55
55
I
180 201Right-handed alpha
Helix 56
56
I
213 225Right-handed alpha
Helix 57
57
I
236 241Right-handed alpha
Helix 58
58
I
242 257Right-handed alpha
Helix 59
59
I
259 270Right-handed alpha
Helix 60
60
I
293 314Right-handed alpha
Helix 61
61
I
318 322Right-handed 310
Helix 62
62
I
340 351Right-handed alpha
Helix 63
63
I
357 361Right-handed 310
Helix 64
64
I
394 403Right-handed alpha
Helix 65
65
I
407 409Right-handed 310
Helix 66
66
I
410 423Right-handed alpha
Helix 67
67
I
426 438Right-handed alpha
Helix 68
68
I
439 446Right-handed 310
Helix 69
69
I
450 461Right-handed alpha
Helix 70
70
M
53 60Right-handed alpha
Helix 71
71
M
71 87Right-handed alpha
Helix 72
72
M
96 103Right-handed alpha
Helix 73
73
M
119 123Right-handed 310
Helix 74
74
M
126 130Right-handed 310
Helix 75
75
M
138 149Right-handed alpha
Helix 76
76
M
165 170Right-handed alpha
Helix 77
77
M
180 201Right-handed alpha
Helix 78
78
M
213 218Right-handed alpha
Helix 79
79
M
220 225Right-handed alpha
Helix 80
80
M
236 241Right-handed alpha
Helix 81
81
M
242 257Right-handed alpha
Helix 82
82
M
259 270Right-handed alpha
Helix 83
83
M
293 314Right-handed alpha
Helix 84
84
M
318 322Right-handed 310
Helix 85
85
M
340 351Right-handed alpha
Helix 86
86
M
359 361Right-handed 310
Helix 87
87
M
394 403Right-handed alpha
Helix 88
88
M
407 409Right-handed 310
Helix 89
89
M
410 423Right-handed alpha
Helix 90
90
M
426 438Right-handed alpha
Helix 91
91
M
439 446Right-handed 310
Helix 92
92
M
450 462Right-handed alpha
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There are 24 sheets in PDB entry 4K4Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
279 284anti-parallel
Strand 3
A
271 276anti-parallel
Strand 4
A
154 158parallel
Strand 5
A
175 178anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
404 405anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
162 164anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
330 335anti-parallel
Strand 3
A
323 327anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
355 357anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 381first strand
Strand 2
A
389 392anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 8first strand
Strand 2
E
279 284anti-parallel
Strand 3
E
271 276anti-parallel
Strand 4
E
154 158parallel
Strand 5
E
175 178anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
26 27first strand
Strand 2
E
404 405anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 40first strand
Strand 2
E
162 164anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
228 230first strand
Strand 2
E
330 335anti-parallel
Strand 3
E
323 327anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
232 234first strand
Strand 2
E
355 357anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
373 374first strand
Strand 2
E
377 381anti-parallel
Strand 3
E
389 392anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
2 8first strand
Strand 2
I
279 284anti-parallel
Strand 3
I
271 276anti-parallel
Strand 4
I
154 158parallel
Strand 5
I
175 178anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
26 27first strand
Strand 2
I
404 405anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
38 40first strand
Strand 2
I
162 164anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
228 230first strand
Strand 2
I
330 335anti-parallel
Strand 3
I
323 327anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
233 234first strand
Strand 2
I
355 356anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
373 374first strand
Strand 2
I
377 381anti-parallel
Strand 3
I
389 392anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
2 8first strand
Strand 2
M
279 284anti-parallel
Strand 3
M
271 276anti-parallel
Strand 4
M
154 158parallel
Strand 5
M
175 178anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
26 27first strand
Strand 2
M
404 405anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
38 40first strand
Strand 2
M
162 164anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
228 230first strand
Strand 2
M
330 335anti-parallel
Strand 3
M
323 327anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
232 234first strand
Strand 2
M
355 357anti-parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
373 374first strand
Strand 2
M
377 381anti-parallel
Strand 3
M
389 392anti-parallel
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