Analysis of interatomic Contacts of Structural Units in PDB entry:
4K5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4K5S entry

There is 1 chain in PDB entry 4K5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10ASN 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4K5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 34Right-handed alpha
Helix 2
2
A
57 67Right-handed alpha
Helix 3
3
A
69 75Right-handed alpha
Helix 4
4
A
96 98Right-handed 310
Helix 5
5
A
109 124Right-handed alpha
Helix 6
6
A
170 176Right-handed alpha
Helix 7
7
A
244 257Right-handed alpha
Helix 8
8
A
291 293Right-handed 310
Helix 9
9
A
303 325Right-handed alpha
Helix 10
10
A
328 358Right-handed alpha
Helix 11
11
A
363 376Right-handed alpha
Helix 12
12
A
377 390Right-handed alpha
Helix 13
13
A
429 433Right-handed alpha
Helix 14
14
A
434 436Right-handed 310
Helix 15
15
A
446 453Right-handed alpha
Helix 16
16
A
454 457Right-handed 310
Helix 17
17
A
493 506Right-handed alpha
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There are 8 sheets in PDB entry 4K5S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
38 42parallel
Strand 3
A
13 18parallel
Strand 4
A
153 164parallel
Strand 5
A
144 150anti-parallel
Strand 6
A
133 139anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
38 42parallel
Strand 3
A
13 18parallel
Strand 4
A
153 164parallel
Strand 5
A
287 289parallel
Strand 6
A
283 284anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
105 106anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
88 94anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
276 278anti-parallel
Strand 3
A
295 296anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
222 231anti-parallel
Strand 4
A
187 196anti-parallel
Strand 5
A
263 273anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 420first strand
Strand 2
A
426 428anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 464first strand
Strand 2
A
439 442parallel
Strand 3
A
475 478anti-parallel
Strand 4
A
484 488anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il