Analysis of interatomic Contacts of Structural Units in PDB entry:
4K6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4K6M entry

There are 2 chains in PDB entry 4K6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5GLU 895
B
 GLY 5GLU 895
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 90 helices in PDB entry 4K6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 18Right-handed alpha
Helix 2
2
A
20 28Right-handed alpha
Helix 3
3
A
37 46Right-handed alpha
Helix 4
4
A
57 67Right-handed alpha
Helix 5
5
A
85 93Right-handed alpha
Helix 6
6
A
120 122Right-handed 310
Helix 7
7
A
131 135Right-handed 310
Helix 8
8
A
153 173Right-handed alpha
Helix 9
9
A
188 203Right-handed alpha
Helix 10
10
A
228 244Right-handed alpha
Helix 11
11
A
276 278Right-handed 310
Helix 12
12
A
279 290Right-handed alpha
Helix 13
13
A
324 330Right-handed alpha
Helix 14
14
A
331 336Right-handed 310
Helix 15
15
A
337 342Right-handed alpha
Helix 16
16
A
349 361Right-handed alpha
Helix 17
17
A
369 388Right-handed alpha
Helix 18
18
A
397 405Right-handed alpha
Helix 19
19
A
415 419Right-handed 310
Helix 20
20
A
423 429Right-handed alpha
Helix 21
21
A
430 446Right-handed alpha
Helix 22
22
A
480 492Right-handed alpha
Helix 23
23
A
492 497Right-handed alpha
Helix 24
24
A
501 506Right-handed alpha
Helix 25
25
A
513 526Right-handed alpha
Helix 26
26
A
539 544Right-handed 310
Helix 27
27
A
545 553Right-handed alpha
Helix 28
28
A
554 559Right-handed 310
Helix 29
29
A
560 574Right-handed alpha
Helix 30
30
A
587 589Right-handed 310
Helix 31
31
A
608 629Right-handed alpha
Helix 32
32
A
633 637Right-handed 310
Helix 33
33
A
641 661Right-handed alpha
Helix 34
34
A
678 682Right-handed 310
Helix 35
35
A
683 689Right-handed alpha
Helix 36
36
A
707 711Right-handed 310
Helix 37
37
A
735 744Right-handed alpha
Helix 38
38
A
752 771Right-handed alpha
Helix 39
39
A
774 788Right-handed alpha
Helix 40
40
A
813 823Right-handed alpha
Helix 41
41
A
837 841Right-handed 310
Helix 42
42
A
845 852Right-handed alpha
Helix 43
43
A
858 867Right-handed alpha
Helix 44
44
A
867 880Right-handed alpha
Helix 45
45
A
887 895Right-handed 310
Helix 46
46
B
7 17Right-handed alpha
Helix 47
47
B
20 29Right-handed alpha
Helix 48
48
B
37 46Right-handed alpha
Helix 49
49
B
57 68Right-handed alpha
Helix 50
50
B
85 92Right-handed alpha
Helix 51
51
B
120 122Right-handed 310
Helix 52
52
B
131 135Right-handed 310
Helix 53
53
B
153 173Right-handed alpha
Helix 54
54
B
188 203Right-handed alpha
Helix 55
55
B
228 243Right-handed alpha
Helix 56
56
B
275 278Right-handed 310
Helix 57
57
B
279 290Right-handed alpha
Helix 58
58
B
324 331Right-handed alpha
Helix 59
59
B
332 336Right-handed 310
Helix 60
60
B
337 342Right-handed alpha
Helix 61
61
B
349 361Right-handed alpha
Helix 62
62
B
369 388Right-handed alpha
Helix 63
63
B
397 405Right-handed alpha
Helix 64
64
B
415 419Right-handed 310
Helix 65
65
B
423 429Right-handed alpha
Helix 66
66
B
430 447Right-handed alpha
Helix 67
67
B
480 492Right-handed alpha
Helix 68
68
B
492 497Right-handed alpha
Helix 69
69
B
501 506Right-handed alpha
Helix 70
70
B
513 527Right-handed alpha
Helix 71
71
B
539 544Right-handed 310
Helix 72
72
B
545 553Right-handed alpha
Helix 73
73
B
554 559Right-handed 310
Helix 74
74
B
560 574Right-handed alpha
Helix 75
75
B
587 589Right-handed 310
Helix 76
76
B
608 630Right-handed alpha
Helix 77
77
B
633 637Right-handed 310
Helix 78
78
B
641 660Right-handed alpha
Helix 79
79
B
676 681Right-handed 310
Helix 80
80
B
683 689Right-handed alpha
Helix 81
81
B
707 711Right-handed 310
Helix 82
82
B
735 744Right-handed alpha
Helix 83
83
B
752 771Right-handed alpha
Helix 84
84
B
774 787Right-handed alpha
Helix 85
85
B
813 823Right-handed alpha
Helix 86
86
B
837 841Right-handed 310
Helix 87
87
B
845 852Right-handed alpha
Helix 88
88
B
858 867Right-handed alpha
Helix 89
89
B
867 880Right-handed alpha
Helix 90
90
B
887 895Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 4K6M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
253 255parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
97 103parallel
Strand 3
A
75 80parallel
Strand 4
A
142 145parallel
Strand 5
A
178 183parallel
Strand 6
A
219 222anti-parallel
Strand 7
A
205 207anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 313first strand
Strand 2
A
591 598anti-parallel
Strand 3
A
578 585anti-parallel
Strand 4
A
454 458parallel
Strand 5
A
475 478anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
745 746anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
462 464anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 666first strand
Strand 2
A
669 672anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 722first strand
Strand 2
A
728 733anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
253 255parallel
Back to list of sheets
Back to top of page

There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
97 103parallel
Strand 3
B
75 80parallel
Strand 4
B
142 145parallel
Strand 5
B
178 183parallel
Strand 6
B
219 222anti-parallel
Strand 7
B
205 207anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 313first strand
Strand 2
B
591 598anti-parallel
Strand 3
B
578 585anti-parallel
Strand 4
B
454 458parallel
Strand 5
B
475 479anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 323first strand
Strand 2
B
745 746anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 345first strand
Strand 2
B
462 464anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
663 666first strand
Strand 2
B
669 672anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
717 722first strand
Strand 2
B
728 733anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il