Analysis of interatomic Contacts of Structural Units in PDB entry:
4K96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4K96 entry

There are 6 chains in PDB entry 4K96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 149ASP 505
B
 SER 146ASP 505
E
 A 1 A 17
F
 T 1 T 17
G
 A 1 A 17
H
 T 1 T 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4K96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
149 158Right-handed alpha
Helix 2
2
A
160 182Right-handed alpha
Helix 3
3
A
248 250Right-handed 310
Helix 4
4
A
258 275Right-handed alpha
Helix 5
5
A
319 323Right-handed 310
Helix 6
6
A
333 341Right-handed alpha
Helix 7
7
A
367 377Right-handed alpha
Helix 8
8
A
393 412Right-handed alpha
Helix 9
9
A
413 416Right-handed 310
Helix 10
10
A
419 434Right-handed alpha
Helix 11
11
A
436 443Right-handed 310
Helix 12
12
A
444 462Right-handed alpha
Helix 13
13
A
482 499Right-handed alpha
Helix 14
14
A
501 505Right-handed 310
Helix 15
15
B
147 158Right-handed alpha
Helix 16
16
B
160 183Right-handed alpha
Helix 17
17
B
248 250Right-handed 310
Helix 18
18
B
258 275Right-handed alpha
Helix 19
19
B
319 323Right-handed 310
Helix 20
20
B
333 341Right-handed alpha
Helix 21
21
B
367 377Right-handed alpha
Helix 22
22
B
393 412Right-handed alpha
Helix 23
23
B
413 416Right-handed 310
Helix 24
24
B
419 434Right-handed alpha
Helix 25
25
B
436 443Right-handed 310
Helix 26
26
B
444 462Right-handed alpha
Helix 27
27
B
482 499Right-handed alpha
Helix 28
28
B
501 505Right-handed 310
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There are 6 sheets in PDB entry 4K96. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
211 219anti-parallel
Strand 3
A
303 314parallel
Strand 4
A
345 349anti-parallel
Strand 5
A
363 366anti-parallel
Strand 6
A
234 239anti-parallel
Strand 7
A
223 227anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
211 219anti-parallel
Strand 3
A
303 314parallel
Strand 4
A
293 299anti-parallel
Strand 5
A
281 284anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
256 257anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 197first strand
Strand 2
B
211 219anti-parallel
Strand 3
B
303 314parallel
Strand 4
B
345 349anti-parallel
Strand 5
B
362 366anti-parallel
Strand 6
B
234 239anti-parallel
Strand 7
B
223 227anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 197first strand
Strand 2
B
211 219anti-parallel
Strand 3
B
303 314parallel
Strand 4
B
293 299anti-parallel
Strand 5
B
281 284anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
256 257anti-parallel
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