Analysis of interatomic Contacts of Structural Units in PDB entry:
4KAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KAV entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 4KAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 210SER 279
A
 ALA 281PRO 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4KAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
243 251Right-handed 310
Helix 2
2
A
257 263Right-handed alpha
Helix 3
3
A
279 288Right-handed alpha
Helix 4
4
A
292 296Right-handed 310
Helix 5
5
A
297 303Right-handed alpha
Helix 6
6
A
306 314Right-handed alpha
Helix 7
7
A
340 343Right-handed 310
Helix 8
8
A
355 360Right-handed 310
Helix 9
9
A
361 367Right-handed alpha
Helix 10
10
A
386 391Right-handed 310
Helix 11
11
A
392 396Right-handed 310
Helix 12
12
A
406 410Right-handed 310
Helix 13
13
A
411 438Right-handed alpha
Helix 14
14
A
459 461Right-handed 310
Helix 15
15
A
468 472Right-handed 310
Helix 16
16
A
473 478Right-handed alpha
Helix 17
17
A
486 493Right-handed alpha
Helix 18
18
A
496 507Right-handed alpha
Helix 19
19
A
513 522Right-handed alpha
Helix 20
20
A
531 535Right-handed 310
Helix 21
21
A
537 541Right-handed 310
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There are 5 sheets in PDB entry 4KAV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
524 525anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
481 485anti-parallel
Strand 3
A
444 451anti-parallel
Strand 4
A
232 239parallel
Strand 5
A
373 378parallel
Strand 6
A
317 322parallel
Strand 7
A
336 338parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
509 510parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
352 353anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
463 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il