Analysis of interatomic Contacts of Structural Units in PDB entry:
4KBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KBE entry

There are 2 chains in PDB entry 4KBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE -1ILE 328
B
 MSE -1ILE 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4KBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 26Right-handed alpha
Helix 2
2
A
37 48Right-handed alpha
Helix 3
3
A
57 70Right-handed alpha
Helix 4
4
A
82 95Right-handed alpha
Helix 5
5
A
129 135Right-handed 310
Helix 6
6
A
136 140Right-handed 310
Helix 7
7
A
141 147Right-handed alpha
Helix 8
8
A
156 159Right-handed 310
Helix 9
9
A
162 177Right-handed alpha
Helix 10
10
A
187 204Right-handed alpha
Helix 11
11
A
214 221Right-handed alpha
Helix 12
12
A
225 237Right-handed alpha
Helix 13
13
A
245 247Right-handed 310
Helix 14
14
A
273 288Right-handed alpha
Helix 15
15
A
291 307Right-handed alpha
Helix 16
16
A
317 325Right-handed alpha
Helix 17
17
B
19 26Right-handed alpha
Helix 18
18
B
37 48Right-handed alpha
Helix 19
19
B
57 70Right-handed alpha
Helix 20
20
B
82 95Right-handed alpha
Helix 21
21
B
129 135Right-handed 310
Helix 22
22
B
136 140Right-handed 310
Helix 23
23
B
141 147Right-handed alpha
Helix 24
24
B
156 159Right-handed 310
Helix 25
25
B
162 177Right-handed alpha
Helix 26
26
B
187 204Right-handed alpha
Helix 27
27
B
214 222Right-handed alpha
Helix 28
28
B
225 237Right-handed alpha
Helix 29
29
B
245 247Right-handed 310
Helix 30
30
B
273 288Right-handed alpha
Helix 31
31
B
291 307Right-handed alpha
Helix 32
32
B
317 325Right-handed alpha
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There are 4 sheets in PDB entry 4KBE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
73 76parallel
Strand 3
A
2 7parallel
Strand 4
A
148 154parallel
Strand 5
A
180 184parallel
Strand 6
A
209 213parallel
Strand 7
A
239 243parallel
Strand 8
A
249 253anti-parallel
Strand 9
A
256 260anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
123 128parallel
Strand 3
A
111 117anti-parallel
Strand 4
A
11 17parallel
Strand 5
A
52 55anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
73 76parallel
Strand 3
B
2 7parallel
Strand 4
B
148 154parallel
Strand 5
B
180 184parallel
Strand 6
B
209 213parallel
Strand 7
B
239 243parallel
Strand 8
B
249 253anti-parallel
Strand 9
B
256 260anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
123 128parallel
Strand 3
B
111 117anti-parallel
Strand 4
B
11 17parallel
Strand 5
B
52 55anti-parallel
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