Analysis of interatomic Contacts of Structural Units in PDB entry:
4KBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KBM entry

There are 2 chains in PDB entry 4KBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG -5GLY 426
B
 ILE 2ALA 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4KBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 59Right-handed alpha
Helix 2
2
A
61 72Right-handed alpha
Helix 3
3
A
78 88Right-handed alpha
Helix 4
4
A
112 119Right-handed alpha
Helix 5
5
A
228 235Right-handed alpha
Helix 6
6
A
238 247Right-handed alpha
Helix 7
7
A
249 259Right-handed alpha
Helix 8
8
A
262 276Right-handed alpha
Helix 9
9
A
282 295Right-handed alpha
Helix 10
10
A
302 315Right-handed alpha
Helix 11
11
A
328 344Right-handed alpha
Helix 12
12
A
374 401Right-handed alpha
Helix 13
13
A
407 412Right-handed alpha
Helix 14
14
A
414 425Right-handed alpha
Helix 15
15
B
51 53Right-handed 310
Helix 16
16
B
63 76Right-handed alpha
Helix 17
17
B
86 98Right-handed alpha
Helix 18
18
B
100 116Right-handed alpha
Helix 19
19
B
121 143Right-handed alpha
Helix 20
20
B
149 160Right-handed alpha
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There are 5 sheets in PDB entry 4KBM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
97 106anti-parallel
Strand 3
A
124 135anti-parallel
Strand 4
A
140 152anti-parallel
Strand 5
B
44 49anti-parallel
Strand 6
B
32 39anti-parallel
Strand 7
B
15 25anti-parallel
Strand 8
B
8 11anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
165 167anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
370 373anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 185first strand
Strand 2
A
192 199anti-parallel
Strand 3
A
206 210anti-parallel
Strand 4
A
216 220anti-parallel
Strand 5
A
226 227anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
357 358anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il