Analysis of interatomic Contacts of Structural Units in PDB entry:
4KC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KC9 entry

There is 1 chain in PDB entry 4KC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 101GLU 553
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4KC9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
105 120Right-handed alpha
Helix 2
2
A
120 125Right-handed alpha
Helix 3
3
A
127 138Right-handed alpha
Helix 4
4
A
142 151Right-handed alpha
Helix 5
5
A
153 162Right-handed alpha
Helix 6
6
A
194 196Right-handed 310
Helix 7
7
A
209 222Right-handed alpha
Helix 8
8
A
241 249Right-handed alpha
Helix 9
9
A
251 269Right-handed alpha
Helix 10
10
A
316 327Right-handed alpha
Helix 11
11
A
408 430Right-handed alpha
Helix 12
12
A
433 449Right-handed alpha
Helix 13
13
A
451 456Right-handed alpha
Helix 14
14
A
456 482Right-handed alpha
Helix 15
15
A
487 507Right-handed alpha
Helix 16
16
A
517 547Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4KC9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
284 286anti-parallel
Strand 3
A
273 275anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
206 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
302 304anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
350 352anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
370 372anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il