Analysis of interatomic Contacts of Structural Units in PDB entry:
4KD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KD6 entry

There is 1 chain in PDB entry 4KD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4ILE 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4KD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 24Right-handed 310
Helix 2
2
A
28 45Right-handed alpha
Helix 3
3
A
82 94Right-handed alpha
Helix 4
4
A
109 118Right-handed alpha
Helix 5
5
A
132 137Right-handed 310
Helix 6
6
A
141 152Right-handed alpha
Helix 7
7
A
152 163Right-handed alpha
Helix 8
8
A
168 174Right-handed alpha
Helix 9
9
A
182 184Right-handed 310
Helix 10
10
A
185 199Right-handed alpha
Helix 11
11
A
201 230Right-handed alpha
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There are 2 sheets in PDB entry 4KD6. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
13 18anti-parallel
Strand 3
A
50 55parallel
Strand 4
A
99 102parallel
Strand 5
A
120 123parallel
Strand 6
A
179 180parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
106 108parallel
Strand 3
A
128 130parallel
Strand 4
A
165 167anti-parallel
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