Analysis of interatomic Contacts of Structural Units in PDB entry:
4KDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KDC entry

There is 1 chain in PDB entry 4KDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 16ASN 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4KDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 25Right-handed alpha
Helix 2
2
A
34 53Right-handed alpha
Helix 3
3
A
68 77Right-handed alpha
Helix 4
4
A
87 102Right-handed alpha
Helix 5
5
A
111 119Right-handed alpha
Helix 6
6
A
131 135Right-handed 310
Helix 7
7
A
137 148Right-handed alpha
Helix 8
8
A
166 173Right-handed alpha
Helix 9
9
A
173 180Right-handed alpha
Helix 10
10
A
193 203Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4KDC.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
80 84parallel
Strand 3
A
59 63parallel
Strand 4
A
123 128parallel
Strand 5
A
149 160parallel
Strand 6
A
232 238anti-parallel
Strand 7
A
207 217anti-parallel
Strand 8
A
222 226anti-parallel
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