Analysis of interatomic Contacts of Structural Units in PDB entry:
4KDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KDP entry

There are 9 chains in PDB entry 4KDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 151
B
 MET 1LEU 151
C
 MET 1LEU 151
D
 MET 1LEU 151
E
 MET 1LYS 150
F
 MET 1LEU 151
G
 MET 1LEU 151
H
 C 1 A 11
J
 C 1 C 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 4KDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 33Right-handed alpha
Helix 2
2
A
37 48Right-handed alpha
Helix 3
3
A
53 60Right-handed alpha
Helix 4
4
A
68 74Right-handed alpha
Helix 5
5
A
100 122Right-handed alpha
Helix 6
6
A
126 148Right-handed alpha
Helix 7
7
B
2 28Right-handed alpha
Helix 8
8
B
29 32Right-handed 310
Helix 9
9
B
37 48Right-handed alpha
Helix 10
10
B
53 59Right-handed alpha
Helix 11
11
B
72 78Right-handed alpha
Helix 12
12
B
100 122Right-handed alpha
Helix 13
13
B
130 146Right-handed alpha
Helix 14
14
C
4 26Right-handed alpha
Helix 15
15
C
27 33Right-handed alpha
Helix 16
16
C
40 50Right-handed alpha
Helix 17
17
C
53 61Right-handed alpha
Helix 18
18
C
69 77Right-handed alpha
Helix 19
19
C
100 123Right-handed alpha
Helix 20
20
C
126 135Right-handed alpha
Helix 21
21
C
135 150Right-handed alpha
Helix 22
22
D
4 34Right-handed alpha
Helix 23
23
D
53 58Right-handed alpha
Helix 24
24
D
65 78Right-handed alpha
Helix 25
25
D
100 123Right-handed alpha
Helix 26
26
D
126 151Right-handed alpha
Helix 27
27
E
4 24Right-handed alpha
Helix 28
28
E
29 34Right-handed alpha
Helix 29
29
E
39 48Right-handed alpha
Helix 30
30
E
53 58Right-handed alpha
Helix 31
31
E
64 75Right-handed alpha
Helix 32
32
E
100 111Right-handed alpha
Helix 33
33
E
113 121Right-handed alpha
Helix 34
34
E
126 148Right-handed alpha
Helix 35
35
F
4 28Right-handed alpha
Helix 36
36
F
29 34Right-handed alpha
Helix 37
37
F
37 50Right-handed alpha
Helix 38
38
F
54 58Right-handed alpha
Helix 39
39
F
64 69Right-handed alpha
Helix 40
40
F
70 78Right-handed alpha
Helix 41
41
F
101 123Right-handed alpha
Helix 42
42
F
126 149Right-handed alpha
Helix 43
43
G
5 27Right-handed alpha
Helix 44
44
G
27 34Right-handed alpha
Helix 45
45
G
39 48Right-handed alpha
Helix 46
46
G
53 60Right-handed alpha
Helix 47
47
G
66 78Right-handed alpha
Helix 48
48
G
101 120Right-handed alpha
Helix 49
49
G
121 125Right-handed 310
Helix 50
50
G
126 149Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4KDP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 83first strand
Strand 2
D
97 99anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
52 53first strand
Strand 2
F
96 97anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
81 82first strand
Strand 2
G
98 99anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il