Analysis of interatomic Contacts of Structural Units in PDB entry:
4KDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KDY entry

There are 2 chains in PDB entry 4KDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -6PRO 220
B
 PHE -2PRO 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4KDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
34 45Right-handed alpha
Helix 3
3
A
70 82Right-handed alpha
Helix 4
4
A
91 107Right-handed alpha
Helix 5
5
A
109 113Right-handed 310
Helix 6
6
A
114 125Right-handed alpha
Helix 7
7
A
127 150Right-handed alpha
Helix 8
8
A
162 178Right-handed alpha
Helix 9
9
A
185 197Right-handed alpha
Helix 10
10
A
198 205Right-handed alpha
Helix 11
11
A
206 209Right-handed 310
Helix 12
12
A
214 218Right-handed 310
Helix 13
13
B
11 24Right-handed alpha
Helix 14
14
B
34 45Right-handed alpha
Helix 15
15
B
70 82Right-handed alpha
Helix 16
16
B
91 107Right-handed alpha
Helix 17
17
B
109 113Right-handed 310
Helix 18
18
B
114 125Right-handed alpha
Helix 19
19
B
127 150Right-handed alpha
Helix 20
20
B
162 178Right-handed alpha
Helix 21
21
B
185 197Right-handed alpha
Helix 22
22
B
198 205Right-handed alpha
Helix 23
23
B
206 209Right-handed 310
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There are 2 sheets in PDB entry 4KDY. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
2 7parallel
Strand 3
A
56 61anti-parallel
Strand 4
A
64 69anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
2 7parallel
Strand 3
B
56 61anti-parallel
Strand 4
B
64 69anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il