Analysis of interatomic Contacts of Structural Units in PDB entry:
4KE4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KE4 entry

There is 1 chain in PDB entry 4KE4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4KE4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 30Right-handed alpha
Helix 2
2
A
61 73Right-handed alpha
Helix 3
3
A
76 81Right-handed 310
Helix 4
4
A
111 116Right-handed 310
Helix 5
5
A
121 128Right-handed 310
Helix 6
6
A
166 182Right-handed alpha
Helix 7
7
A
193 198Right-handed 310
Helix 8
8
A
209 213Right-handed 310
Helix 9
9
A
245 255Right-handed alpha
Helix 10
10
A
268 285Right-handed alpha
Helix 11
11
A
327 333Right-handed alpha
Helix 12
12
A
333 347Right-handed alpha
Helix 13
13
A
349 362Right-handed alpha
Helix 14
14
A
365 370Right-handed 310
Helix 15
15
A
372 377Right-handed alpha
Helix 16
16
A
435 442Right-handed alpha
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There are 4 sheets in PDB entry 4KE4. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
100 107anti-parallel
Strand 3
A
142 149parallel
Strand 4
A
154 160anti-parallel
Strand 5
A
36 42anti-parallel
Strand 6
A
403 406anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
91 95anti-parallel
Strand 3
A
82 85anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 244first strand
Strand 2
A
427 434anti-parallel
Strand 3
A
414 419anti-parallel
Strand 4
A
381 385parallel
Strand 5
A
292 300parallel
Strand 6
A
318 321anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 244first strand
Strand 2
A
427 434anti-parallel
Strand 3
A
414 419anti-parallel
Strand 4
A
381 385parallel
Strand 5
A
292 300parallel
Strand 6
A
324 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il