Analysis of interatomic Contacts of Structural Units in PDB entry:
4KG5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4KG5 entry

There are 4 chains in PDB entry 4KG5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 4	GLN 361
A	ALA 4	GLN 361
C	ALA 4	GLN 361
D	ALA 4	GLN 361

There are 71 helices in PDB entry 4KG5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	5	24	Right-handed alpha
Helix 2	2	B	65	80	Right-handed alpha
Helix 3	3	B	88	92	Right-handed 310
Helix 4	4	B	98	102	Right-handed 310
Helix 5	5	B	105	111	Right-handed alpha
Helix 6	6	B	127	137	Right-handed alpha
Helix 7	7	B	151	163	Right-handed alpha
Helix 8	8	B	169	178	Right-handed alpha
Helix 9	9	B	192	199	Right-handed 310
Helix 10	10	B	216	222	Right-handed alpha
Helix 11	11	B	226	239	Right-handed alpha
Helix 12	12	B	240	243	Right-handed 310
Helix 13	13	B	245	257	Right-handed alpha
Helix 14	14	B	279	287	Right-handed alpha
Helix 15	15	B	288	293	Right-handed alpha
Helix 16	16	B	330	333	Right-handed 310
Helix 17	17	B	345	359	Right-handed alpha
Helix 18	18	A	5	24	Right-handed alpha
Helix 19	19	A	65	80	Right-handed alpha
Helix 20	20	A	88	92	Right-handed 310
Helix 21	21	A	98	102	Right-handed 310
Helix 22	22	A	105	111	Right-handed alpha
Helix 23	23	A	127	138	Right-handed alpha
Helix 24	24	A	151	163	Right-handed alpha
Helix 25	25	A	164	167	Right-handed 310
Helix 26	26	A	169	178	Right-handed alpha
Helix 27	27	A	192	199	Right-handed 310
Helix 28	28	A	216	222	Right-handed alpha
Helix 29	29	A	226	239	Right-handed alpha
Helix 30	30	A	240	243	Right-handed 310
Helix 31	31	A	245	256	Right-handed alpha
Helix 32	32	A	279	287	Right-handed alpha
Helix 33	33	A	288	293	Right-handed alpha
Helix 34	34	A	330	333	Right-handed 310
Helix 35	35	A	345	359	Right-handed alpha
Helix 36	36	C	5	24	Right-handed alpha
Helix 37	37	C	65	80	Right-handed alpha
Helix 38	38	C	88	92	Right-handed 310
Helix 39	39	C	98	102	Right-handed 310
Helix 40	40	C	105	111	Right-handed alpha
Helix 41	41	C	127	137	Right-handed alpha
Helix 42	42	C	151	163	Right-handed alpha
Helix 43	43	C	164	167	Right-handed 310
Helix 44	44	C	169	178	Right-handed alpha
Helix 45	45	C	192	199	Right-handed 310
Helix 46	46	C	216	221	Right-handed alpha
Helix 47	47	C	226	239	Right-handed alpha
Helix 48	48	C	240	243	Right-handed 310
Helix 49	49	C	245	256	Right-handed alpha
Helix 50	50	C	279	287	Right-handed alpha
Helix 51	51	C	288	293	Right-handed alpha
Helix 52	52	C	330	333	Right-handed 310
Helix 53	53	C	345	361	Right-handed alpha
Helix 54	54	D	5	24	Right-handed alpha
Helix 55	55	D	65	80	Right-handed alpha
Helix 56	56	D	88	92	Right-handed 310
Helix 57	57	D	98	102	Right-handed 310
Helix 58	58	D	105	111	Right-handed alpha
Helix 59	59	D	127	138	Right-handed alpha
Helix 60	60	D	151	163	Right-handed alpha
Helix 61	61	D	164	167	Right-handed 310
Helix 62	62	D	169	178	Right-handed alpha
Helix 63	63	D	192	199	Right-handed 310
Helix 64	64	D	216	222	Right-handed alpha
Helix 65	65	D	226	239	Right-handed alpha
Helix 66	66	D	240	243	Right-handed 310
Helix 67	67	D	245	256	Right-handed alpha
Helix 68	68	D	279	287	Right-handed alpha
Helix 69	69	D	288	293	Right-handed alpha
Helix 70	70	D	330	333	Right-handed 310
Helix 71	71	D	345	359	Right-handed alpha

There are 16 sheets in PDB entry 4KG5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	37	47	anti-parallel
Strand 3	B	27	34	anti-parallel
Strand 4	B	334	340	anti-parallel
Strand 5	B	323	329	anti-parallel
Strand 6	B	311	318	anti-parallel
Strand 7	B	272	275	anti-parallel
Strand 8	B	265	267	anti-parallel
Strand 9	B	258	262	anti-parallel
Strand 10	B	299	305	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	224	225	anti-parallel
Strand 3	B	187	188	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	296	297	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	204	first strand
Strand 2	B	207	209	anti-parallel

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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	37	47	anti-parallel
Strand 3	A	27	34	anti-parallel
Strand 4	A	334	340	anti-parallel
Strand 5	A	323	329	anti-parallel
Strand 6	A	311	318	anti-parallel
Strand 7	A	272	275	anti-parallel
Strand 8	A	265	267	anti-parallel
Strand 9	A	258	262	anti-parallel
Strand 10	A	299	305	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	224	225	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	296	297	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	207	209	anti-parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	37	47	anti-parallel
Strand 3	C	27	34	anti-parallel
Strand 4	C	334	340	anti-parallel
Strand 5	C	323	329	anti-parallel
Strand 6	C	311	318	anti-parallel
Strand 7	C	272	275	anti-parallel
Strand 8	C	265	267	anti-parallel
Strand 9	C	258	262	anti-parallel
Strand 10	C	299	305	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	224	225	anti-parallel
Strand 3	C	187	188	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	296	297	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	204	first strand
Strand 2	C	207	209	anti-parallel

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There are 10 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	37	47	anti-parallel
Strand 3	D	27	34	anti-parallel
Strand 4	D	334	340	anti-parallel
Strand 5	D	323	329	anti-parallel
Strand 6	D	311	318	anti-parallel
Strand 7	D	272	275	anti-parallel
Strand 8	D	265	267	anti-parallel
Strand 9	D	258	262	anti-parallel
Strand 10	D	299	305	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	61	first strand
Strand 2	D	224	225	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	296	297	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	204	first strand
Strand 2	D	207	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4KG5

Analysis of interatomic Contacts of Structural Units in PDB entry:
4KG5