Analysis of interatomic Contacts of Structural Units in PDB entry:
4KGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KGM entry

There are 4 chains in PDB entry 4KGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ASN 240
B
 SER 3LEU 239
C
 ASP 2LEU 239
D
 SER 3LEU 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 4KGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 14Right-handed alpha
Helix 2
2
A
33 38Right-handed alpha
Helix 3
3
A
46 64Right-handed alpha
Helix 4
4
A
91 95Right-handed 310
Helix 5
5
A
96 120Right-handed alpha
Helix 6
6
A
136 138Right-handed 310
Helix 7
7
A
139 161Right-handed alpha
Helix 8
8
A
173 184Right-handed alpha
Helix 9
9
A
188 192Right-handed 310
Helix 10
10
A
193 199Right-handed alpha
Helix 11
11
A
225 229Right-handed 310
Helix 12
12
A
230 238Right-handed alpha
Helix 13
13
B
4 14Right-handed alpha
Helix 14
14
B
33 38Right-handed alpha
Helix 15
15
B
46 64Right-handed alpha
Helix 16
16
B
91 95Right-handed 310
Helix 17
17
B
96 120Right-handed alpha
Helix 18
18
B
136 138Right-handed 310
Helix 19
19
B
139 162Right-handed alpha
Helix 20
20
B
165 170Right-handed alpha
Helix 21
21
B
173 186Right-handed alpha
Helix 22
22
B
188 192Right-handed 310
Helix 23
23
B
193 199Right-handed alpha
Helix 24
24
B
225 229Right-handed 310
Helix 25
25
B
230 235Right-handed alpha
Helix 26
26
C
3 14Right-handed alpha
Helix 27
27
C
33 38Right-handed alpha
Helix 28
28
C
46 64Right-handed alpha
Helix 29
29
C
91 95Right-handed 310
Helix 30
30
C
96 120Right-handed alpha
Helix 31
31
C
136 138Right-handed 310
Helix 32
32
C
139 162Right-handed alpha
Helix 33
33
C
174 184Right-handed alpha
Helix 34
34
C
188 192Right-handed 310
Helix 35
35
C
193 199Right-handed alpha
Helix 36
36
C
230 235Right-handed alpha
Helix 37
37
D
4 14Right-handed alpha
Helix 38
38
D
33 38Right-handed alpha
Helix 39
39
D
46 64Right-handed alpha
Helix 40
40
D
91 95Right-handed 310
Helix 41
41
D
96 120Right-handed alpha
Helix 42
42
D
136 138Right-handed 310
Helix 43
43
D
139 162Right-handed alpha
Helix 44
44
D
174 180Right-handed alpha
Helix 45
45
D
188 192Right-handed 310
Helix 46
46
D
193 199Right-handed alpha
Helix 47
47
D
225 229Right-handed 310
Helix 48
48
D
230 235Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4KGM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 134first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
76 81anti-parallel
Strand 4
A
67 73anti-parallel
Strand 5
A
200 205anti-parallel
Strand 6
A
216 220anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 134first strand
Strand 2
B
25 31anti-parallel
Strand 3
B
76 81anti-parallel
Strand 4
B
67 73anti-parallel
Strand 5
B
200 204anti-parallel
Strand 6
B
217 220anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 134first strand
Strand 2
C
25 31anti-parallel
Strand 3
C
76 81anti-parallel
Strand 4
C
67 73anti-parallel
Strand 5
C
200 207anti-parallel
Strand 6
C
214 220anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
128 134first strand
Strand 2
D
25 31anti-parallel
Strand 3
D
76 81anti-parallel
Strand 4
D
67 73anti-parallel
Strand 5
D
200 209anti-parallel
Strand 6
D
212 220anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il