Analysis of interatomic Contacts of Structural Units in PDB entry:
4KIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KIP entry

There are 2 chains in PDB entry 4KIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5PRO 352
B
 ARG 5PRO 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4KIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 78Right-handed alpha
Helix 2
2
A
95 99Right-handed 310
Helix 3
3
A
123 144Right-handed alpha
Helix 4
4
A
152 154Right-handed 310
Helix 5
5
A
203 219Right-handed alpha
Helix 6
6
A
227 237Right-handed alpha
Helix 7
7
A
255 262Right-handed alpha
Helix 8
8
A
278 289Right-handed alpha
Helix 9
9
A
298 304Right-handed alpha
Helix 10
10
A
305 309Right-handed 310
Helix 11
11
A
313 317Right-handed 310
Helix 12
12
A
325 329Right-handed 310
Helix 13
13
A
333 347Right-handed alpha
Helix 14
14
B
61 76Right-handed alpha
Helix 15
15
B
123 144Right-handed alpha
Helix 16
16
B
152 154Right-handed 310
Helix 17
17
B
183 187Right-handed 310
Helix 18
18
B
190 195Right-handed alpha
Helix 19
19
B
203 219Right-handed alpha
Helix 20
20
B
227 240Right-handed alpha
Helix 21
21
B
243 248Right-handed alpha
Helix 22
22
B
252 262Right-handed alpha
Helix 23
23
B
269 273Right-handed 310
Helix 24
24
B
278 289Right-handed alpha
Helix 25
25
B
298 304Right-handed alpha
Helix 26
26
B
305 309Right-handed 310
Helix 27
27
B
313 317Right-handed 310
Helix 28
28
B
325 329Right-handed 310
Helix 29
29
B
333 347Right-handed alpha
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There are 6 sheets in PDB entry 4KIP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
17 21anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 29first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
49 55anti-parallel
Strand 4
A
103 107anti-parallel
Strand 5
A
88 90anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
156 158anti-parallel
Strand 3
A
165 166anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
16 21anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 29first strand
Strand 2
B
36 43anti-parallel
Strand 3
B
48 55anti-parallel
Strand 4
B
103 107anti-parallel
Strand 5
B
88 90anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
156 158anti-parallel
Strand 3
B
164 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il