Analysis of interatomic Contacts of Structural Units in PDB entry:
4KJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KJD entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 4KJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4ASP 91
A
 ALA 93ASP 481
B
 PRO 3ASP 91
B
 ALA 93PRO 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 4KJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 7Right-handed 310
Helix 2
2
A
8 26Right-handed alpha
Helix 3
3
A
45 60Right-handed alpha
Helix 4
4
A
70 74Right-handed 310
Helix 5
5
A
91 102Right-handed alpha
Helix 6
6
A
120 125Right-handed 310
Helix 7
7
A
131 139Right-handed alpha
Helix 8
8
A
153 158Right-handed alpha
Helix 9
9
A
170 174Right-handed 310
Helix 10
10
A
175 181Right-handed alpha
Helix 11
11
A
185 193Right-handed alpha
Helix 12
12
A
203 208Right-handed 310
Helix 13
13
A
220 224Right-handed 310
Helix 14
14
A
232 239Right-handed alpha
Helix 15
15
A
249 259Right-handed alpha
Helix 16
16
A
276 280Right-handed 310
Helix 17
17
A
287 300Right-handed alpha
Helix 18
18
A
314 319Right-handed alpha
Helix 19
19
A
324 345Right-handed alpha
Helix 20
20
A
445 449Right-handed 310
Helix 21
21
A
456 466Right-handed alpha
Helix 22
22
B
4 7Right-handed 310
Helix 23
23
B
8 26Right-handed alpha
Helix 24
24
B
45 60Right-handed alpha
Helix 25
25
B
70 74Right-handed 310
Helix 26
26
B
91 102Right-handed alpha
Helix 27
27
B
120 125Right-handed 310
Helix 28
28
B
131 139Right-handed alpha
Helix 29
29
B
153 158Right-handed alpha
Helix 30
30
B
170 174Right-handed 310
Helix 31
31
B
175 181Right-handed alpha
Helix 32
32
B
185 193Right-handed alpha
Helix 33
33
B
203 208Right-handed 310
Helix 34
34
B
220 224Right-handed 310
Helix 35
35
B
232 239Right-handed alpha
Helix 36
36
B
249 259Right-handed alpha
Helix 37
37
B
276 280Right-handed 310
Helix 38
38
B
287 300Right-handed alpha
Helix 39
39
B
314 319Right-handed alpha
Helix 40
40
B
324 345Right-handed alpha
Helix 41
41
B
445 449Right-handed 310
Helix 42
42
B
456 466Right-handed alpha
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There are 2 sheets in PDB entry 4KJD. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
264 268parallel
Strand 3
A
198 202parallel
Strand 4
A
142 150parallel
Strand 5
A
306 312parallel
Strand 6
A
35 41parallel
Strand 7
A
350 356parallel
Strand 8
A
437 442anti-parallel
Strand 9
A
76 81anti-parallel
Strand 10
A
452 454parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 247first strand
Strand 2
B
264 268parallel
Strand 3
B
198 202parallel
Strand 4
B
142 150parallel
Strand 5
B
306 312parallel
Strand 6
B
35 41parallel
Strand 7
B
350 356parallel
Strand 8
B
437 442anti-parallel
Strand 9
B
76 81anti-parallel
Strand 10
B
452 454parallel
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