Analysis of interatomic Contacts of Structural Units in PDB entry:
4KJZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4KJZ entry

There are 4 chains in PDB entry 4KJZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	ARG 470
D	VAL 4	GLN 469
B	LYS 3	VAL 466
C	LYS 3	TYR 474

There are 59 helices in PDB entry 4KJZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	6	14	Right-handed alpha
Helix 2	2	A	16	28	Right-handed alpha
Helix 3	3	A	40	68	Right-handed alpha
Helix 4	4	A	85	95	Right-handed alpha
Helix 5	5	A	158	172	Right-handed alpha
Helix 6	6	A	188	200	Right-handed alpha
Helix 7	7	A	222	237	Right-handed alpha
Helix 8	8	A	330	358	Right-handed alpha
Helix 9	9	A	387	393	Right-handed alpha
Helix 10	10	A	413	424	Right-handed alpha
Helix 11	11	A	439	445	Right-handed alpha
Helix 12	12	A	455	465	Right-handed alpha
Helix 13	13	D	5	14	Right-handed alpha
Helix 14	14	D	16	26	Right-handed alpha
Helix 15	15	D	39	67	Right-handed alpha
Helix 16	16	D	85	95	Right-handed alpha
Helix 17	17	D	135	141	Right-handed alpha
Helix 18	18	D	158	171	Right-handed alpha
Helix 19	19	D	188	199	Right-handed alpha
Helix 20	20	D	203	207	Right-handed 310
Helix 21	21	D	222	238	Right-handed alpha
Helix 22	22	D	328	350	Right-handed alpha
Helix 23	23	D	351	353	Right-handed 310
Helix 24	24	D	359	366	Right-handed alpha
Helix 25	25	D	381	393	Right-handed alpha
Helix 26	26	D	413	420	Right-handed alpha
Helix 27	27	D	435	446	Right-handed alpha
Helix 28	28	D	454	464	Right-handed alpha
Helix 29	29	B	5	13	Right-handed alpha
Helix 30	30	B	16	28	Right-handed alpha
Helix 31	31	B	39	68	Right-handed alpha
Helix 32	32	B	85	98	Right-handed alpha
Helix 33	33	B	135	141	Right-handed alpha
Helix 34	34	B	160	171	Right-handed alpha
Helix 35	35	B	188	199	Right-handed alpha
Helix 36	36	B	203	207	Right-handed 310
Helix 37	37	B	222	238	Right-handed alpha
Helix 38	38	B	328	350	Right-handed alpha
Helix 39	39	B	357	364	Right-handed alpha
Helix 40	40	B	381	392	Right-handed alpha
Helix 41	41	B	413	423	Right-handed alpha
Helix 42	42	B	436	441	Right-handed 310
Helix 43	43	B	454	463	Right-handed alpha
Helix 44	44	B	464	466	Right-handed 310
Helix 45	45	C	6	13	Right-handed alpha
Helix 46	46	C	16	26	Right-handed alpha
Helix 47	47	C	39	69	Right-handed alpha
Helix 48	48	C	85	95	Right-handed alpha
Helix 49	49	C	158	171	Right-handed alpha
Helix 50	50	C	188	199	Right-handed alpha
Helix 51	51	C	203	207	Right-handed 310
Helix 52	52	C	222	238	Right-handed alpha
Helix 53	53	C	328	352	Right-handed alpha
Helix 54	54	C	353	358	Right-handed alpha
Helix 55	55	C	359	362	Right-handed 310
Helix 56	56	C	381	394	Right-handed alpha
Helix 57	57	C	413	423	Right-handed alpha
Helix 58	58	C	435	442	Right-handed alpha
Helix 59	59	C	454	465	Right-handed alpha

There are 21 sheets in PDB entry 4KJZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	37	38	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	116	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	75	80	parallel
Strand 4	A	146	152	parallel
Strand 5	A	174	180	parallel
Strand 6	A	211	214	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	251	first strand
Strand 2	A	261	270	anti-parallel
Strand 3	A	255	257	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	251	first strand
Strand 2	A	261	270	anti-parallel
Strand 3	A	306	311	anti-parallel
Strand 4	A	290	292	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	278	281	anti-parallel
Strand 3	A	323	326	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	409	first strand
Strand 2	A	372	379	parallel
Strand 3	A	426	430	parallel
Strand 4	A	449	452	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	117	first strand
Strand 2	D	120	125	anti-parallel
Strand 3	D	75	79	parallel
Strand 4	D	146	152	parallel
Strand 5	D	174	180	parallel
Strand 6	D	212	215	parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	287	first strand
Strand 2	D	278	281	anti-parallel
Strand 3	D	321	326	anti-parallel
Strand 4	D	248	257	anti-parallel
Strand 5	D	261	270	anti-parallel
Strand 6	D	307	310	anti-parallel
Strand 7	D	291	292	anti-parallel
Strand 8	D	298	299	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	274	first strand
Strand 2	D	301	302	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	376	379	parallel
Strand 3	D	427	430	parallel
Strand 4	D	451	452	parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	120	125	parallel
Strand 3	B	112	117	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	149	152	parallel
Strand 3	B	177	180	parallel
Strand 4	B	212	215	parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	287	first strand
Strand 2	B	278	281	anti-parallel
Strand 3	B	322	326	anti-parallel
Strand 4	B	248	255	anti-parallel
Strand 5	B	263	270	anti-parallel
Strand 6	B	307	311	anti-parallel
Strand 7	B	290	292	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	274	first strand
Strand 2	B	301	302	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	378	first strand
Strand 2	B	426	430	parallel
Strand 3	B	451	452	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	37	38	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	116	first strand
Strand 2	C	121	125	anti-parallel
Strand 3	C	75	80	parallel
Strand 4	C	146	151	parallel
Strand 5	C	174	175	parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	116	first strand
Strand 2	C	121	125	anti-parallel
Strand 3	C	75	80	parallel
Strand 4	C	146	151	parallel
Strand 5	C	177	179	parallel
Strand 6	C	212	214	parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	257	first strand
Strand 2	C	261	270	anti-parallel
Strand 3	C	307	313	anti-parallel
Strand 4	C	284	293	anti-parallel
Strand 5	C	278	281	anti-parallel
Strand 6	C	322	326	anti-parallel
Strand 7	C	248	257	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	274	first strand
Strand 2	C	301	302	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	408	409	first strand
Strand 2	C	374	379	parallel
Strand 3	C	425	430	parallel
Strand 4	C	450	452	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4KJZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4KJZ