Analysis of interatomic Contacts of Structural Units in PDB entry:
4KM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KM7 entry

There are 2 chains in PDB entry 4KM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 31MET 233
B
 GLU 32ALA 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4KM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 55Right-handed 310
Helix 2
2
A
57 61Right-handed 310
Helix 3
3
A
93 110Right-handed alpha
Helix 4
4
A
113 117Right-handed 310
Helix 5
5
A
135 146Right-handed alpha
Helix 6
6
A
178 182Right-handed alpha
Helix 7
7
A
184 192Right-handed alpha
Helix 8
8
A
215 219Right-handed 310
Helix 9
9
A
221 233Right-handed alpha
Helix 10
10
B
51 55Right-handed 310
Helix 11
11
B
57 61Right-handed 310
Helix 12
12
B
93 110Right-handed alpha
Helix 13
13
B
113 117Right-handed 310
Helix 14
14
B
135 146Right-handed alpha
Helix 15
15
B
178 182Right-handed alpha
Helix 16
16
B
184 192Right-handed alpha
Helix 17
17
B
215 219Right-handed 310
Helix 18
18
B
221 232Right-handed alpha
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There are 4 sheets in PDB entry 4KM7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
44 45anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
176 177anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
44 45anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
176 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il