Analysis of interatomic Contacts of Structural Units in PDB entry:
4KMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KMQ entry

There is 1 chain in PDB entry 4KMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 33LYS 1091
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4KMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
305 310Right-handed alpha
Helix 2
2
A
370 383Right-handed alpha
Helix 3
3
A
389 393Right-handed 310
Helix 4
4
A
404 418Right-handed alpha
Helix 5
5
A
454 458Right-handed 310
Helix 6
6
A
466 477Right-handed alpha
Helix 7
7
A
496 510Right-handed alpha
Helix 8
8
A
539 556Right-handed alpha
Helix 9
9
A
582 606Right-handed alpha
Helix 10
10
A
619 623Right-handed 310
Helix 11
11
A
634 651Right-handed alpha
Helix 12
12
A
669 682Right-handed alpha
Helix 13
13
A
702 711Right-handed alpha
Helix 14
14
A
714 729Right-handed alpha
Helix 15
15
A
729 744Right-handed alpha
Helix 16
16
A
750 755Right-handed alpha
Helix 17
17
A
758 762Right-handed 310
Helix 18
18
A
886 888Right-handed 310
Helix 19
19
A
926 933Right-handed alpha
Helix 20
20
A
972 974Right-handed 310
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There are 15 sheets in PDB entry 4KMQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
53 54anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
104 112anti-parallel
Strand 4
A
96 101anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
77 85anti-parallel
Strand 3
A
93 94anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
77 85anti-parallel
Strand 3
A
119 128anti-parallel
Strand 4
A
134 142anti-parallel
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There are 13 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 282first strand
Strand 2
A
315 321anti-parallel
Strand 3
A
325 329anti-parallel
Strand 4
A
361 366anti-parallel
Strand 5
A
186 192anti-parallel
Strand 6
A
176 183anti-parallel
Strand 7
A
162 168anti-parallel
Strand 8
A
145 157anti-parallel
Strand 9
A
254 257anti-parallel
Strand 10
A
263 271anti-parallel
Strand 11
A
346 355anti-parallel
Strand 12
A
335 339anti-parallel
Strand 13
A
294 296anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
214 218anti-parallel
Strand 3
A
222 227anti-parallel
Strand 4
A
232 237anti-parallel
Strand 5
A
242 245anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 657first strand
Strand 2
A
625 627parallel
Strand 3
A
612 613parallel
Strand 4
A
562 564parallel
Strand 5
A
480 485parallel
Strand 6
A
424 427parallel
Strand 7
A
395 397parallel
Strand 8
A
686 688parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 489first strand
Strand 2
A
533 534anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 749first strand
Strand 2
A
768 770anti-parallel
Strand 3
A
774 776anti-parallel
Strand 4
A
822 825anti-parallel
Strand 5
A
795 798anti-parallel
Strand 6
A
804 806anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
786 791first strand
Strand 2
A
809 814anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
829 834first strand
Strand 2
A
853 858anti-parallel
Strand 3
A
902 907parallel
Strand 4
A
945 950anti-parallel
Strand 5
A
936 940anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
863 870first strand
Strand 2
A
876 885anti-parallel
Strand 3
A
890 895anti-parallel
Strand 4
A
957 962anti-parallel
Strand 5
A
913 916anti-parallel
Strand 6
A
919 920anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
969 970first strand
Strand 2
A
1082 1090anti-parallel
Strand 3
A
993 997anti-parallel
Strand 4
A
980 982anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
969 970first strand
Strand 2
A
1082 1090anti-parallel
Strand 3
A
1015 1024anti-parallel
Strand 4
A
1055 1063anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
975 977first strand
Strand 2
A
1003 1008anti-parallel
Strand 3
A
1068 1073anti-parallel
Strand 4
A
1030 1036anti-parallel
Strand 5
A
1039 1045anti-parallel
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