Analysis of interatomic Contacts of Structural Units in PDB entry:
4KMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KMR entry

There are 2 chains in PDB entry 4KMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 66GLY 345
B
 SER 68GLY 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 4KMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 96Right-handed alpha
Helix 2
2
A
109 119Right-handed alpha
Helix 3
3
A
120 123Right-handed 310
Helix 4
4
A
167 182Right-handed alpha
Helix 5
5
A
198 215Right-handed alpha
Helix 6
6
A
220 222Right-handed 310
Helix 7
7
A
231 245Right-handed alpha
Helix 8
8
A
256 270Right-handed alpha
Helix 9
9
A
288 292Right-handed 310
Helix 10
10
A
302 320Right-handed alpha
Helix 11
11
A
340 344Right-handed 310
Helix 12
12
B
80 97Right-handed alpha
Helix 13
13
B
109 118Right-handed alpha
Helix 14
14
B
167 182Right-handed alpha
Helix 15
15
B
198 215Right-handed alpha
Helix 16
16
B
220 222Right-handed 310
Helix 17
17
B
231 246Right-handed alpha
Helix 18
18
B
256 270Right-handed alpha
Helix 19
19
B
286 291Right-handed 310
Helix 20
20
B
302 321Right-handed alpha
Helix 21
21
B
340 344Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 4KMR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 105first strand
Strand 2
A
70 75parallel
Strand 3
A
128 130parallel
Strand 4
A
149 152parallel
Strand 5
A
162 164parallel
Strand 6
A
330 331parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
187 190parallel
Strand 3
A
251 254parallel
Strand 4
A
279 281parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
336 338anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 105first strand
Strand 2
B
69 75parallel
Strand 3
B
127 130parallel
Strand 4
B
149 152parallel
Strand 5
B
162 164parallel
Strand 6
B
330 331parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
187 190parallel
Strand 3
B
251 254parallel
Strand 4
B
279 281parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 300first strand
Strand 2
B
336 338anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il