Analysis of interatomic Contacts of Structural Units in PDB entry:
4KMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KMS entry

There are 2 chains in PDB entry 4KMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2ASN 239
B
 HIS -2HIS 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4KMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
36 48Right-handed alpha
Helix 3
3
A
58 74Right-handed alpha
Helix 4
4
A
91 95Right-handed 310
Helix 5
5
A
96 108Right-handed alpha
Helix 6
6
A
108 126Right-handed alpha
Helix 7
7
A
145 167Right-handed alpha
Helix 8
8
A
181 185Right-handed 310
Helix 9
9
A
190 201Right-handed alpha
Helix 10
10
A
208 221Right-handed alpha
Helix 11
11
A
222 225Right-handed 310
Helix 12
12
B
12 25Right-handed alpha
Helix 13
13
B
36 48Right-handed alpha
Helix 14
14
B
58 74Right-handed alpha
Helix 15
15
B
91 95Right-handed 310
Helix 16
16
B
96 108Right-handed alpha
Helix 17
17
B
108 126Right-handed alpha
Helix 18
18
B
145 167Right-handed alpha
Helix 19
19
B
195 201Right-handed alpha
Helix 20
20
B
208 221Right-handed alpha
Helix 21
21
B
222 225Right-handed 310
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There are 2 sheets in PDB entry 4KMS. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
28 33parallel
Strand 3
A
4 7parallel
Strand 4
A
79 82parallel
Strand 5
A
128 133parallel
Strand 6
A
171 178parallel
Strand 7
A
231 234parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
28 33parallel
Strand 3
B
4 7parallel
Strand 4
B
79 82parallel
Strand 5
B
128 133parallel
Strand 6
B
171 178parallel
Strand 7
B
231 234parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il