Analysis of interatomic Contacts of Structural Units in PDB entry:
4KNC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KNC entry

There are 2 chains in PDB entry 4KNC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 42ALA 463
A
 GLY 41ALA 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 4KNC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
44 53Right-handed 310
Helix 2
2
B
57 61Right-handed 310
Helix 3
3
B
86 103Right-handed alpha
Helix 4
4
B
114 120Right-handed alpha
Helix 5
5
B
121 123Right-handed 310
Helix 6
6
B
124 131Right-handed alpha
Helix 7
7
B
132 150Right-handed alpha
Helix 8
8
B
157 161Right-handed 310
Helix 9
9
B
178 196Right-handed alpha
Helix 10
10
B
198 202Right-handed 310
Helix 11
11
B
219 230Right-handed alpha
Helix 12
12
B
252 260Right-handed 310
Helix 13
13
B
268 275Right-handed 310
Helix 14
14
B
276 286Right-handed alpha
Helix 15
15
B
300 309Right-handed alpha
Helix 16
16
B
309 315Right-handed alpha
Helix 17
17
B
332 343Right-handed alpha
Helix 18
18
B
377 379Right-handed 310
Helix 19
19
A
44 53Right-handed 310
Helix 20
20
A
55 60Right-handed alpha
Helix 21
21
A
75 79Right-handed alpha
Helix 22
22
A
86 103Right-handed alpha
Helix 23
23
A
114 120Right-handed alpha
Helix 24
24
A
121 123Right-handed 310
Helix 25
25
A
124 131Right-handed alpha
Helix 26
26
A
132 150Right-handed alpha
Helix 27
27
A
157 161Right-handed 310
Helix 28
28
A
178 194Right-handed alpha
Helix 29
29
A
198 202Right-handed 310
Helix 30
30
A
219 230Right-handed alpha
Helix 31
31
A
268 272Right-handed 310
Helix 32
32
A
276 286Right-handed alpha
Helix 33
33
A
300 307Right-handed alpha
Helix 34
34
A
309 315Right-handed alpha
Helix 35
35
A
332 344Right-handed alpha
Helix 36
36
A
377 379Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 4KNC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
72 74anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 111first strand
Strand 2
B
319 324parallel
Strand 3
B
263 266parallel
Strand 4
B
289 291parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 217first strand
Strand 2
B
236 246anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 359first strand
Strand 2
B
454 461anti-parallel
Strand 3
B
381 387anti-parallel
Strand 4
B
422 426anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 369first strand
Strand 2
B
438 444anti-parallel
Strand 3
B
394 401anti-parallel
Strand 4
B
406 412anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
72 74anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 112first strand
Strand 2
A
319 325parallel
Strand 3
A
263 266parallel
Strand 4
A
289 291parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 217first strand
Strand 2
A
236 245anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 359first strand
Strand 2
A
454 461anti-parallel
Strand 3
A
381 387anti-parallel
Strand 4
A
422 426anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 369first strand
Strand 2
A
438 444anti-parallel
Strand 3
A
394 401anti-parallel
Strand 4
A
406 412anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il