Analysis of interatomic Contacts of Structural Units in PDB entry:
4KRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KRD entry

There are 2 chains in PDB entry 4KRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TYR 301
B
 SER 243CYS 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4KRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 5Right-handed 310
Helix 2
2
A
47 56Right-handed alpha
Helix 3
3
A
89 95Right-handed alpha
Helix 4
4
A
106 127Right-handed alpha
Helix 5
5
A
135 137Right-handed 310
Helix 6
6
A
171 175Right-handed 310
Helix 7
7
A
176 181Right-handed alpha
Helix 8
8
A
188 205Right-handed alpha
Helix 9
9
A
213 226Right-handed alpha
Helix 10
10
A
233 239Right-handed 310
Helix 11
11
A
253 259Right-handed alpha
Helix 12
12
A
260 262Right-handed 310
Helix 13
13
A
267 278Right-handed alpha
Helix 14
14
A
281 285Right-handed 310
Helix 15
15
A
287 293Right-handed alpha
Helix 16
16
A
294 301Right-handed 310
Helix 17
17
B
245 249Right-handed 310
Helix 18
18
B
261 281Right-handed alpha
Helix 19
19
B
290 299Right-handed alpha
Helix 20
20
B
309 322Right-handed alpha
Helix 21
21
B
324 339Right-handed alpha
Helix 22
22
B
355 357Right-handed 310
Helix 23
23
B
358 375Right-handed alpha
Helix 24
24
B
380 389Right-handed alpha
Helix 25
25
B
391 407Right-handed alpha
Helix 26
26
B
414 430Right-handed alpha
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There are 4 sheets in PDB entry 4KRD. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 16first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
32 39anti-parallel
Strand 4
A
77 83anti-parallel
Strand 5
A
68 74anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
139 141anti-parallel
Strand 3
A
147 149anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
156 157anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 342first strand
Strand 2
B
348 350anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il