Analysis of interatomic Contacts of Structural Units in PDB entry:
4KVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KVF entry

There is 1 chain in PDB entry 4KVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 50PHE 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4KVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
72 89Right-handed alpha
Helix 2
2
A
105 116Right-handed alpha
Helix 3
3
A
131 141Right-handed alpha
Helix 4
4
A
153 157Right-handed 310
Helix 5
5
A
165 181Right-handed alpha
Helix 6
6
A
196 211Right-handed alpha
Helix 7
7
A
212 216Right-handed 310
Helix 8
8
A
229 244Right-handed alpha
Helix 9
9
A
254 267Right-handed alpha
Helix 10
10
A
281 291Right-handed alpha
Helix 11
11
A
301 318Right-handed alpha
Helix 12
12
A
332 334Right-handed 310
Helix 13
13
A
340 342Right-handed 310
Helix 14
14
A
357 361Right-handed 310
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There are 4 sheets in PDB entry 4KVF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
62 66parallel
Strand 3
A
120 123parallel
Strand 4
A
144 148parallel
Strand 5
A
159 162parallel
Strand 6
A
344 346parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 225first strand
Strand 2
A
185 191parallel
Strand 3
A
247 252parallel
Strand 4
A
275 278parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
351 353anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
336 338anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il