Analysis of interatomic Contacts of Structural Units in PDB entry:
4KVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KVK entry

There is 1 chain in PDB entry 4KVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8TYR 618
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4KVK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 13Right-handed 310
Helix 2
2
A
14 21Right-handed alpha
Helix 3
3
A
22 38Right-handed alpha
Helix 4
4
A
39 44Right-handed 310
Helix 5
5
A
45 64Right-handed alpha
Helix 6
6
A
78 82Right-handed 310
Helix 7
7
A
123 132Right-handed alpha
Helix 8
8
A
145 160Right-handed alpha
Helix 9
9
A
174 179Right-handed alpha
Helix 10
10
A
215 220Right-handed alpha
Helix 11
11
A
262 287Right-handed alpha
Helix 12
12
A
291 314Right-handed alpha
Helix 13
13
A
314 320Right-handed alpha
Helix 14
14
A
322 335Right-handed alpha
Helix 15
15
A
338 346Right-handed alpha
Helix 16
16
A
372 379Right-handed alpha
Helix 17
17
A
380 385Right-handed 310
Helix 18
18
A
413 415Right-handed 310
Helix 19
19
A
416 428Right-handed alpha
Helix 20
20
A
428 438Right-handed alpha
Helix 21
21
A
450 456Right-handed 310
Helix 22
22
A
471 483Right-handed alpha
Helix 23
23
A
487 495Right-handed alpha
Helix 24
24
A
502 506Right-handed 310
Helix 25
25
A
509 521Right-handed alpha
Helix 26
26
A
528 536Right-handed alpha
Helix 27
27
A
545 562Right-handed alpha
Helix 28
28
A
563 567Right-handed 310
Helix 29
29
A
571 576Right-handed alpha
Helix 30
30
A
576 585Right-handed alpha
Helix 31
31
A
588 597Right-handed alpha
Helix 32
32
A
597 605Right-handed alpha
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There are 4 sheets in PDB entry 4KVK. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
206 207anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
185 188anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
203 204anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 392first strand
Strand 2
A
406 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il