Analysis of interatomic Contacts of Structural Units in PDB entry:
4KY4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4KY4 entry

There are 8 chains in PDB entry 4KY4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	VAL 610
B	LYS 3	VAL 610
C	LYS 3	VAL 610
D	LYS 3	VAL 610
E	LYS 3	VAL 610
F	LYS 3	VAL 610
G	LYS 3	VAL 610
H	LYS 3	VAL 610

There are147 helices in PDB entry 4KY4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	28	40	Right-handed alpha
Helix 2	2	A	81	87	Right-handed alpha
Helix 3	3	A	88	92	Right-handed 310
Helix 4	4	A	129	140	Right-handed alpha
Helix 5	5	A	155	163	Right-handed alpha
Helix 6	6	A	189	193	Right-handed 310
Helix 7	7	A	290	298	Right-handed alpha
Helix 8	8	A	324	338	Right-handed alpha
Helix 9	9	A	374	387	Right-handed alpha
Helix 10	10	A	391	398	Right-handed alpha
Helix 11	11	A	403	407	Right-handed 310
Helix 12	12	A	408	415	Right-handed alpha
Helix 13	13	A	428	436	Right-handed alpha
Helix 14	14	A	453	465	Right-handed alpha
Helix 15	15	A	480	484	Right-handed 310
Helix 16	16	A	516	536	Right-handed alpha
Helix 17	17	A	556	564	Right-handed alpha
Helix 18	18	A	578	582	Right-handed 310
Helix 19	19	A	584	588	Right-handed 310
Helix 20	20	B	28	40	Right-handed alpha
Helix 21	21	B	81	87	Right-handed alpha
Helix 22	22	B	129	140	Right-handed alpha
Helix 23	23	B	155	163	Right-handed alpha
Helix 24	24	B	189	193	Right-handed 310
Helix 25	25	B	286	300	Right-handed alpha
Helix 26	26	B	324	338	Right-handed alpha
Helix 27	27	B	374	388	Right-handed alpha
Helix 28	28	B	392	397	Right-handed alpha
Helix 29	29	B	403	407	Right-handed 310
Helix 30	30	B	408	414	Right-handed alpha
Helix 31	31	B	429	436	Right-handed alpha
Helix 32	32	B	453	465	Right-handed alpha
Helix 33	33	B	516	536	Right-handed alpha
Helix 34	34	B	556	564	Right-handed alpha
Helix 35	35	B	578	582	Right-handed 310
Helix 36	36	B	584	588	Right-handed 310
Helix 37	37	B	589	591	Right-handed 310
Helix 38	38	C	28	40	Right-handed alpha
Helix 39	39	C	81	87	Right-handed alpha
Helix 40	40	C	88	92	Right-handed 310
Helix 41	41	C	129	140	Right-handed alpha
Helix 42	42	C	155	163	Right-handed alpha
Helix 43	43	C	189	193	Right-handed 310
Helix 44	44	C	290	298	Right-handed alpha
Helix 45	45	C	324	338	Right-handed alpha
Helix 46	46	C	374	388	Right-handed alpha
Helix 47	47	C	392	398	Right-handed alpha
Helix 48	48	C	403	407	Right-handed 310
Helix 49	49	C	408	415	Right-handed alpha
Helix 50	50	C	428	436	Right-handed alpha
Helix 51	51	C	453	465	Right-handed alpha
Helix 52	52	C	480	484	Right-handed 310
Helix 53	53	C	516	536	Right-handed alpha
Helix 54	54	C	556	564	Right-handed alpha
Helix 55	55	C	578	582	Right-handed 310
Helix 56	56	C	584	588	Right-handed 310
Helix 57	57	D	28	40	Right-handed alpha
Helix 58	58	D	81	87	Right-handed alpha
Helix 59	59	D	88	92	Right-handed 310
Helix 60	60	D	129	140	Right-handed alpha
Helix 61	61	D	155	163	Right-handed alpha
Helix 62	62	D	189	193	Right-handed 310
Helix 63	63	D	286	300	Right-handed alpha
Helix 64	64	D	324	338	Right-handed alpha
Helix 65	65	D	374	388	Right-handed alpha
Helix 66	66	D	392	397	Right-handed alpha
Helix 67	67	D	403	407	Right-handed 310
Helix 68	68	D	408	414	Right-handed alpha
Helix 69	69	D	429	436	Right-handed alpha
Helix 70	70	D	453	465	Right-handed alpha
Helix 71	71	D	516	536	Right-handed alpha
Helix 72	72	D	556	564	Right-handed alpha
Helix 73	73	D	578	582	Right-handed 310
Helix 74	74	D	584	588	Right-handed 310
Helix 75	75	D	589	591	Right-handed 310
Helix 76	76	E	28	40	Right-handed alpha
Helix 77	77	E	81	87	Right-handed alpha
Helix 78	78	E	88	92	Right-handed 310
Helix 79	79	E	129	140	Right-handed alpha
Helix 80	80	E	155	163	Right-handed alpha
Helix 81	81	E	189	193	Right-handed 310
Helix 82	82	E	290	298	Right-handed alpha
Helix 83	83	E	324	338	Right-handed alpha
Helix 84	84	E	374	388	Right-handed alpha
Helix 85	85	E	392	398	Right-handed alpha
Helix 86	86	E	408	415	Right-handed alpha
Helix 87	87	E	428	436	Right-handed alpha
Helix 88	88	E	453	465	Right-handed alpha
Helix 89	89	E	480	484	Right-handed 310
Helix 90	90	E	516	536	Right-handed alpha
Helix 91	91	E	556	564	Right-handed alpha
Helix 92	92	E	578	582	Right-handed 310
Helix 93	93	E	584	588	Right-handed 310
Helix 94	94	F	28	40	Right-handed alpha
Helix 95	95	F	81	87	Right-handed alpha
Helix 96	96	F	129	140	Right-handed alpha
Helix 97	97	F	155	163	Right-handed alpha
Helix 98	98	F	189	193	Right-handed 310
Helix 99	99	F	286	300	Right-handed alpha
Helix 100	100	F	324	338	Right-handed alpha
Helix 101	101	F	374	387	Right-handed alpha
Helix 102	102	F	392	397	Right-handed alpha
Helix 103	103	F	403	407	Right-handed 310
Helix 104	104	F	408	414	Right-handed alpha
Helix 105	105	F	429	436	Right-handed alpha
Helix 106	106	F	453	465	Right-handed alpha
Helix 107	107	F	516	536	Right-handed alpha
Helix 108	108	F	556	564	Right-handed alpha
Helix 109	109	F	578	582	Right-handed 310
Helix 110	110	F	584	588	Right-handed 310
Helix 111	111	F	589	591	Right-handed 310
Helix 112	112	G	28	40	Right-handed alpha
Helix 113	113	G	81	87	Right-handed alpha
Helix 114	114	G	129	140	Right-handed alpha
Helix 115	115	G	155	163	Right-handed alpha
Helix 116	116	G	189	193	Right-handed 310
Helix 117	117	G	287	289	Right-handed 310
Helix 118	118	G	290	298	Right-handed alpha
Helix 119	119	G	324	338	Right-handed alpha
Helix 120	120	G	374	387	Right-handed alpha
Helix 121	121	G	391	397	Right-handed alpha
Helix 122	122	G	403	407	Right-handed 310
Helix 123	123	G	408	414	Right-handed alpha
Helix 124	124	G	429	436	Right-handed alpha
Helix 125	125	G	453	465	Right-handed alpha
Helix 126	126	G	516	536	Right-handed alpha
Helix 127	127	G	556	564	Right-handed alpha
Helix 128	128	G	578	582	Right-handed 310
Helix 129	129	G	584	588	Right-handed 310
Helix 130	130	H	28	39	Right-handed alpha
Helix 131	131	H	81	87	Right-handed alpha
Helix 132	132	H	88	92	Right-handed 310
Helix 133	133	H	129	140	Right-handed alpha
Helix 134	134	H	155	163	Right-handed alpha
Helix 135	135	H	189	193	Right-handed 310
Helix 136	136	H	286	300	Right-handed alpha
Helix 137	137	H	324	338	Right-handed alpha
Helix 138	138	H	374	388	Right-handed alpha
Helix 139	139	H	391	398	Right-handed alpha
Helix 140	140	H	408	415	Right-handed alpha
Helix 141	141	H	428	436	Right-handed alpha
Helix 142	142	H	453	465	Right-handed alpha
Helix 143	143	H	480	484	Right-handed 310
Helix 144	144	H	516	536	Right-handed alpha
Helix 145	145	H	556	564	Right-handed alpha
Helix 146	146	H	578	582	Right-handed 310
Helix 147	147	H	584	588	Right-handed 310

There are 41 sheets in PDB entry 4KY4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	102	first strand
Strand 2	A	75	80	parallel
Strand 3	A	148	150	parallel
Strand 4	A	5	11	parallel
Strand 5	A	166	174	parallel
Strand 6	A	241	251	anti-parallel
Strand 7	A	236	238	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	102	first strand
Strand 2	A	75	80	parallel
Strand 3	A	148	150	parallel
Strand 4	A	5	11	parallel
Strand 5	A	166	174	parallel
Strand 6	A	241	251	anti-parallel
Strand 7	A	226	232	anti-parallel
Strand 8	A	319	320	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	182	183	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	349	360	anti-parallel
Strand 3	A	539	553	anti-parallel
Strand 4	A	502	513	parallel
Strand 5	A	490	497	anti-parallel
Strand 6	A	472	474	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	576	first strand
Strand 2	A	593	596	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	76	80	parallel
Strand 3	B	148	150	parallel
Strand 4	B	5	11	parallel
Strand 5	B	166	174	parallel
Strand 6	B	241	251	anti-parallel
Strand 7	B	236	238	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	76	80	parallel
Strand 3	B	148	150	parallel
Strand 4	B	5	11	parallel
Strand 5	B	166	174	parallel
Strand 6	B	241	251	anti-parallel
Strand 7	B	226	232	anti-parallel
Strand 8	B	319	320	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	182	183	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	349	360	anti-parallel
Strand 3	B	539	553	anti-parallel
Strand 4	B	502	513	parallel
Strand 5	B	490	497	anti-parallel
Strand 6	B	472	474	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	576	first strand
Strand 2	B	593	596	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	11	first strand
Strand 2	C	166	174	parallel
Strand 3	C	241	251	anti-parallel
Strand 4	C	236	238	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	11	first strand
Strand 2	C	166	174	parallel
Strand 3	C	241	251	anti-parallel
Strand 4	C	226	232	anti-parallel
Strand 5	C	319	320	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	182	183	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	102	first strand
Strand 2	C	76	80	parallel
Strand 3	C	148	150	parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	341	first strand
Strand 2	C	349	360	anti-parallel
Strand 3	C	539	553	anti-parallel
Strand 4	C	502	513	parallel
Strand 5	C	490	497	anti-parallel
Strand 6	C	472	474	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	576	first strand
Strand 2	C	593	596	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	102	first strand
Strand 2	D	76	80	parallel
Strand 3	D	148	150	parallel
Strand 4	D	5	11	parallel
Strand 5	D	166	174	parallel
Strand 6	D	241	250	anti-parallel
Strand 7	D	236	238	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	102	first strand
Strand 2	D	76	80	parallel
Strand 3	D	148	150	parallel
Strand 4	D	5	11	parallel
Strand 5	D	166	174	parallel
Strand 6	D	241	250	anti-parallel
Strand 7	D	227	232	anti-parallel
Strand 8	D	319	320	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	182	183	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	341	first strand
Strand 2	D	349	360	anti-parallel
Strand 3	D	539	553	anti-parallel
Strand 4	D	502	513	parallel
Strand 5	D	490	497	anti-parallel
Strand 6	D	472	474	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	573	576	first strand
Strand 2	D	593	596	anti-parallel

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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	98	first strand
Strand 2	E	75	80	parallel
Strand 3	E	148	150	parallel
Strand 4	E	5	11	parallel
Strand 5	E	166	174	parallel
Strand 6	E	241	251	anti-parallel
Strand 7	E	236	238	anti-parallel

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There are 8 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	102	first strand
Strand 2	E	75	80	parallel
Strand 3	E	148	150	parallel
Strand 4	E	5	11	parallel
Strand 5	E	166	174	parallel
Strand 6	E	241	251	anti-parallel
Strand 7	E	226	232	anti-parallel
Strand 8	E	319	320	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	182	183	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	341	first strand
Strand 2	E	349	360	anti-parallel
Strand 3	E	539	553	anti-parallel
Strand 4	E	502	513	parallel
Strand 5	E	490	497	anti-parallel
Strand 6	E	472	474	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	573	576	first strand
Strand 2	E	593	596	anti-parallel

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There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	102	first strand
Strand 2	F	76	80	parallel
Strand 3	F	148	150	parallel
Strand 4	F	5	11	parallel
Strand 5	F	166	174	parallel
Strand 6	F	241	251	anti-parallel
Strand 7	F	236	238	anti-parallel

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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	102	first strand
Strand 2	F	76	80	parallel
Strand 3	F	148	150	parallel
Strand 4	F	5	11	parallel
Strand 5	F	166	174	parallel
Strand 6	F	241	251	anti-parallel
Strand 7	F	226	232	anti-parallel
Strand 8	F	319	320	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	18	first strand
Strand 2	F	182	183	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	341	first strand
Strand 2	F	349	360	anti-parallel
Strand 3	F	539	553	anti-parallel
Strand 4	F	502	513	parallel
Strand 5	F	490	497	anti-parallel
Strand 6	F	472	474	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	573	576	first strand
Strand 2	F	593	596	anti-parallel

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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	102	first strand
Strand 2	G	75	80	parallel
Strand 3	G	148	150	parallel
Strand 4	G	5	11	parallel
Strand 5	G	166	174	parallel
Strand 6	G	241	251	anti-parallel
Strand 7	G	236	238	anti-parallel

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There are 8 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	102	first strand
Strand 2	G	75	80	parallel
Strand 3	G	148	150	parallel
Strand 4	G	5	11	parallel
Strand 5	G	166	174	parallel
Strand 6	G	241	251	anti-parallel
Strand 7	G	226	232	anti-parallel
Strand 8	G	319	320	parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	18	first strand
Strand 2	G	182	183	anti-parallel

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There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	339	341	first strand
Strand 2	G	349	360	anti-parallel
Strand 3	G	539	553	anti-parallel
Strand 4	G	502	513	parallel
Strand 5	G	490	497	anti-parallel
Strand 6	G	472	474	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	573	576	first strand
Strand 2	G	593	596	anti-parallel

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There are 7 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	102	first strand
Strand 2	H	76	80	parallel
Strand 3	H	148	150	parallel
Strand 4	H	5	11	parallel
Strand 5	H	166	174	parallel
Strand 6	H	241	251	anti-parallel
Strand 7	H	236	238	anti-parallel

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There are 8 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	102	first strand
Strand 2	H	76	80	parallel
Strand 3	H	148	150	parallel
Strand 4	H	5	11	parallel
Strand 5	H	166	174	parallel
Strand 6	H	241	251	anti-parallel
Strand 7	H	226	232	anti-parallel
Strand 8	H	319	320	parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	18	first strand
Strand 2	H	182	183	anti-parallel

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There are 6 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	339	341	first strand
Strand 2	H	349	360	anti-parallel
Strand 3	H	539	553	anti-parallel
Strand 4	H	502	513	parallel
Strand 5	H	490	497	anti-parallel
Strand 6	H	472	474	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	573	576	first strand
Strand 2	H	593	596	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4KY4

Analysis of interatomic Contacts of Structural Units in PDB entry:
4KY4