Analysis of interatomic Contacts of Structural Units in PDB entry:
4KYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KYH entry

There are 2 chains in PDB entry 4KYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6THR 182
B
 SER 9ILE 184
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4KYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 19Right-handed alpha
Helix 2
2
A
24 28Right-handed 310
Helix 3
3
A
41 52Right-handed alpha
Helix 4
4
A
77 81Right-handed 310
Helix 5
5
A
84 93Right-handed alpha
Helix 6
6
A
106 110Right-handed 310
Helix 7
7
A
134 145Right-handed alpha
Helix 8
8
A
176 180Right-handed 310
Helix 9
9
B
12 18Right-handed alpha
Helix 10
10
B
24 28Right-handed 310
Helix 11
11
B
41 52Right-handed alpha
Helix 12
12
B
77 81Right-handed 310
Helix 13
13
B
84 93Right-handed alpha
Helix 14
14
B
106 110Right-handed 310
Helix 15
15
B
134 145Right-handed alpha
Helix 16
16
B
176 184Right-handed alpha
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There are 2 sheets in PDB entry 4KYH. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 63first strand
Strand 2
A
68 74anti-parallel
Strand 3
A
98 104anti-parallel
Strand 4
A
31 38parallel
Strand 5
B
125 131anti-parallel
Strand 6
B
171 175parallel
Strand 7
B
162 165anti-parallel
Strand 8
B
148 151anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
162 165anti-parallel
Strand 3
A
171 175anti-parallel
Strand 4
A
125 131parallel
Strand 5
B
31 38anti-parallel
Strand 6
B
98 104parallel
Strand 7
B
68 74anti-parallel
Strand 8
B
56 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il