Analysis of interatomic Contacts of Structural Units in PDB entry:
4KZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KZP entry

There are 4 chains in PDB entry 4KZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 17ALA 308
B
 ASP 17ALA 308
C
 ASP 17MET 312
D
 ASP 17GLU 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 4KZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 45Right-handed alpha
Helix 2
2
A
54 60Right-handed alpha
Helix 3
3
A
62 70Right-handed alpha
Helix 4
4
A
83 97Right-handed alpha
Helix 5
5
A
114 118Right-handed 310
Helix 6
6
A
119 152Right-handed alpha
Helix 7
7
A
166 171Right-handed alpha
Helix 8
8
A
175 197Right-handed alpha
Helix 9
9
A
198 200Right-handed 310
Helix 10
10
A
215 220Right-handed alpha
Helix 11
11
A
235 246Right-handed alpha
Helix 12
12
A
247 251Right-handed 310
Helix 13
13
A
285 299Right-handed alpha
Helix 14
14
B
32 45Right-handed alpha
Helix 15
15
B
54 60Right-handed alpha
Helix 16
16
B
62 70Right-handed alpha
Helix 17
17
B
83 97Right-handed alpha
Helix 18
18
B
114 118Right-handed 310
Helix 19
19
B
119 152Right-handed alpha
Helix 20
20
B
165 171Right-handed alpha
Helix 21
21
B
175 197Right-handed alpha
Helix 22
22
B
198 200Right-handed 310
Helix 23
23
B
235 246Right-handed alpha
Helix 24
24
B
247 251Right-handed 310
Helix 25
25
B
285 298Right-handed alpha
Helix 26
26
C
32 45Right-handed alpha
Helix 27
27
C
54 60Right-handed alpha
Helix 28
28
C
62 71Right-handed alpha
Helix 29
29
C
83 97Right-handed alpha
Helix 30
30
C
114 118Right-handed 310
Helix 31
31
C
119 152Right-handed alpha
Helix 32
32
C
165 171Right-handed alpha
Helix 33
33
C
175 197Right-handed alpha
Helix 34
34
C
198 200Right-handed 310
Helix 35
35
C
212 214Right-handed 310
Helix 36
36
C
215 220Right-handed alpha
Helix 37
37
C
234 246Right-handed alpha
Helix 38
38
C
247 251Right-handed 310
Helix 39
39
C
285 299Right-handed alpha
Helix 40
40
D
32 45Right-handed alpha
Helix 41
41
D
54 60Right-handed alpha
Helix 42
42
D
62 71Right-handed alpha
Helix 43
43
D
83 97Right-handed alpha
Helix 44
44
D
114 118Right-handed 310
Helix 45
45
D
119 152Right-handed alpha
Helix 46
46
D
166 171Right-handed alpha
Helix 47
47
D
175 197Right-handed alpha
Helix 48
48
D
198 200Right-handed 310
Helix 49
49
D
215 220Right-handed alpha
Helix 50
50
D
234 246Right-handed alpha
Helix 51
51
D
247 251Right-handed 310
Helix 52
52
D
285 298Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4KZP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
48 53parallel
Strand 3
A
24 27parallel
Strand 4
A
102 105parallel
Strand 5
A
159 163parallel
Strand 6
A
202 208parallel
Strand 7
A
257 261parallel
Strand 8
A
264 268anti-parallel
Strand 9
D
273 278anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 278first strand
Strand 2
D
264 269anti-parallel
Strand 3
D
257 261anti-parallel
Strand 4
D
202 208parallel
Strand 5
D
159 163parallel
Strand 6
D
102 105parallel
Strand 7
D
24 28parallel
Strand 8
D
48 53parallel
Strand 9
D
74 78parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 78first strand
Strand 2
B
48 53parallel
Strand 3
B
24 28parallel
Strand 4
B
102 105parallel
Strand 5
B
159 163parallel
Strand 6
B
202 208parallel
Strand 7
B
257 261parallel
Strand 8
B
264 269anti-parallel
Strand 9
C
272 278anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 278first strand
Strand 2
C
264 269anti-parallel
Strand 3
C
257 261anti-parallel
Strand 4
C
202 208parallel
Strand 5
C
159 163parallel
Strand 6
C
102 105parallel
Strand 7
C
24 27parallel
Strand 8
C
48 53parallel
Strand 9
C
74 78parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il