Analysis of interatomic Contacts of Structural Units in PDB entry:
4KZW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4KZW entry

There are 2 chains in PDB entry 4KZW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 79ILE 211
B
 ALA 78ILE 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4KZW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
99 110Right-handed alpha
Helix 2
2
A
119 130Right-handed alpha
Helix 3
3
B
99 110Right-handed alpha
Helix 4
4
B
119 130Right-handed alpha
Helix 5
5
B
158 162Right-handed 310
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There are 4 sheets in PDB entry 4KZW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
89 93anti-parallel
Strand 3
A
201 207anti-parallel
Strand 4
A
136 145parallel
Strand 5
A
148 151anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
136 145parallel
Strand 4
A
177 181anti-parallel
Strand 5
A
191 195anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
89 93anti-parallel
Strand 3
B
201 207anti-parallel
Strand 4
B
136 141parallel
Strand 5
B
150 151anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
201 207anti-parallel
Strand 3
B
136 141parallel
Strand 4
B
177 181anti-parallel
Strand 5
B
191 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il