Analysis of interatomic Contacts of Structural Units in PDB entry:
4L00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4L00 entry

There are 2 chains in PDB entry 4L00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 564GLU 850
B
 GLN 565GLU 850
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4L00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
568 573Right-handed alpha
Helix 2
2
A
579 581Right-handed 310
Helix 3
3
A
628 645Right-handed alpha
Helix 4
4
A
674 683Right-handed alpha
Helix 5
5
A
687 708Right-handed alpha
Helix 6
6
A
716 718Right-handed 310
Helix 7
7
A
743 747Right-handed 310
Helix 8
8
A
748 755Right-handed alpha
Helix 9
9
A
760 766Right-handed alpha
Helix 10
10
A
767 770Right-handed 310
Helix 11
11
A
771 772Right-handed 310
Helix 12
12
A
773 788Right-handed alpha
Helix 13
13
A
798 808Right-handed alpha
Helix 14
14
A
817 828Right-handed alpha
Helix 15
15
A
831 835Right-handed 310
Helix 16
16
A
837 849Right-handed alpha
Helix 17
17
B
568 574Right-handed alpha
Helix 18
18
B
579 581Right-handed 310
Helix 19
19
B
626 630Right-handed 310
Helix 20
20
B
631 645Right-handed alpha
Helix 21
21
B
674 683Right-handed alpha
Helix 22
22
B
687 708Right-handed alpha
Helix 23
23
B
716 718Right-handed 310
Helix 24
24
B
743 747Right-handed 310
Helix 25
25
B
748 755Right-handed alpha
Helix 26
26
B
760 766Right-handed alpha
Helix 27
27
B
767 771Right-handed 310
Helix 28
28
B
772 788Right-handed alpha
Helix 29
29
B
798 808Right-handed alpha
Helix 30
30
B
817 828Right-handed alpha
Helix 31
31
B
831 835Right-handed 310
Helix 32
32
B
837 850Right-handed alpha
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There are 4 sheets in PDB entry 4L00. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 592first strand
Strand 2
A
595 602anti-parallel
Strand 3
A
617 624anti-parallel
Strand 4
A
662 668anti-parallel
Strand 5
A
653 659anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 724first strand
Strand 2
A
734 737anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
577 578first strand
Strand 2
B
653 658parallel
Strand 3
B
663 668anti-parallel
Strand 4
B
616 624anti-parallel
Strand 5
B
595 603anti-parallel
Strand 6
B
583 592anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
720 724first strand
Strand 2
B
734 737anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il