Analysis of interatomic Contacts of Structural Units in PDB entry:
4L04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4L04 entry

There are 4 chains in PDB entry 4L04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 5	SER 415
B	LYS 3	LEU 414
C	LYS 4	SER 415
D	LYS 3	ASP 43

There are107 helices in PDB entry 4L04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	16	30	Right-handed alpha
Helix 2	2	A	45	52	Right-handed alpha
Helix 3	3	A	54	68	Right-handed alpha
Helix 4	4	A	79	87	Right-handed alpha
Helix 5	5	A	94	104	Right-handed alpha
Helix 6	6	A	136	140	Right-handed 310
Helix 7	7	A	186	204	Right-handed alpha
Helix 8	8	A	216	235	Right-handed alpha
Helix 9	9	A	235	242	Right-handed alpha
Helix 10	10	A	251	261	Right-handed alpha
Helix 11	11	A	270	286	Right-handed alpha
Helix 12	12	A	312	321	Right-handed alpha
Helix 13	13	A	329	348	Right-handed alpha
Helix 14	14	A	349	369	Right-handed alpha
Helix 15	15	A	373	382	Right-handed alpha
Helix 16	16	A	383	386	Right-handed 310
Helix 17	17	A	387	391	Right-handed 310
Helix 18	18	A	393	413	Right-handed alpha
Helix 19	19	B	16	30	Right-handed alpha
Helix 20	20	B	45	52	Right-handed alpha
Helix 21	21	B	54	68	Right-handed alpha
Helix 22	22	B	79	87	Right-handed alpha
Helix 23	23	B	94	104	Right-handed alpha
Helix 24	24	B	136	141	Right-handed 310
Helix 25	25	B	186	204	Right-handed alpha
Helix 26	26	B	218	235	Right-handed alpha
Helix 27	27	B	235	242	Right-handed alpha
Helix 28	28	B	251	260	Right-handed alpha
Helix 29	29	B	270	286	Right-handed alpha
Helix 30	30	B	312	321	Right-handed alpha
Helix 31	31	B	329	348	Right-handed alpha
Helix 32	32	B	349	368	Right-handed alpha
Helix 33	33	B	373	382	Right-handed alpha
Helix 34	34	B	383	386	Right-handed 310
Helix 35	35	B	387	391	Right-handed 310
Helix 36	36	B	393	413	Right-handed alpha
Helix 37	37	C	16	31	Right-handed alpha
Helix 38	38	C	45	52	Right-handed alpha
Helix 39	39	C	54	68	Right-handed alpha
Helix 40	40	C	79	87	Right-handed alpha
Helix 41	41	C	94	104	Right-handed alpha
Helix 42	42	C	136	141	Right-handed 310
Helix 43	43	C	186	202	Right-handed alpha
Helix 44	44	C	220	235	Right-handed alpha
Helix 45	45	C	235	242	Right-handed alpha
Helix 46	46	C	251	261	Right-handed alpha
Helix 47	47	C	270	286	Right-handed alpha
Helix 48	48	C	312	321	Right-handed alpha
Helix 49	49	C	329	348	Right-handed alpha
Helix 50	50	C	349	369	Right-handed alpha
Helix 51	51	C	373	381	Right-handed alpha
Helix 52	52	C	382	386	Right-handed 310
Helix 53	53	C	387	391	Right-handed 310
Helix 54	54	C	393	413	Right-handed alpha
Helix 55	55	D	16	31	Right-handed alpha
Helix 56	56	D	45	52	Right-handed alpha
Helix 57	57	D	54	68	Right-handed alpha
Helix 58	58	D	79	86	Right-handed alpha
Helix 59	59	D	94	104	Right-handed alpha
Helix 60	60	D	136	141	Right-handed 310
Helix 61	61	D	186	204	Right-handed alpha
Helix 62	62	D	218	235	Right-handed alpha
Helix 63	63	D	235	241	Right-handed alpha
Helix 64	64	D	251	260	Right-handed alpha
Helix 65	65	D	270	285	Right-handed alpha
Helix 66	66	D	312	321	Right-handed alpha
Helix 67	67	D	329	348	Right-handed alpha
Helix 68	68	D	349	369	Right-handed alpha
Helix 69	69	D	373	382	Right-handed alpha
Helix 70	70	D	383	386	Right-handed 310
Helix 71	71	D	387	391	Right-handed 310
Helix 72	72	D	393	413	Right-handed alpha
Helix 73	73	E	16	30	Right-handed alpha
Helix 74	74	E	45	52	Right-handed alpha
Helix 75	75	E	54	68	Right-handed alpha
Helix 76	76	E	79	87	Right-handed alpha
Helix 77	77	E	94	104	Right-handed alpha
Helix 78	78	E	136	141	Right-handed 310
Helix 79	79	E	186	204	Right-handed alpha
Helix 80	80	E	218	235	Right-handed alpha
Helix 81	81	E	235	241	Right-handed alpha
Helix 82	82	E	251	261	Right-handed alpha
Helix 83	83	E	270	286	Right-handed alpha
Helix 84	84	E	312	321	Right-handed alpha
Helix 85	85	E	329	348	Right-handed alpha
Helix 86	86	E	349	369	Right-handed alpha
Helix 87	87	E	373	382	Right-handed alpha
Helix 88	88	E	387	391	Right-handed 310
Helix 89	89	E	393	413	Right-handed alpha
Helix 90	90	F	17	30	Right-handed alpha
Helix 91	91	F	45	52	Right-handed alpha
Helix 92	92	F	54	68	Right-handed alpha
Helix 93	93	F	79	87	Right-handed alpha
Helix 94	94	F	94	104	Right-handed alpha
Helix 95	95	F	136	141	Right-handed 310
Helix 96	96	F	186	204	Right-handed alpha
Helix 97	97	F	218	235	Right-handed alpha
Helix 98	98	F	235	242	Right-handed alpha
Helix 99	99	F	251	261	Right-handed alpha
Helix 100	100	F	270	286	Right-handed alpha
Helix 101	101	F	312	322	Right-handed alpha
Helix 102	102	F	329	348	Right-handed alpha
Helix 103	103	F	349	369	Right-handed alpha
Helix 104	104	F	373	382	Right-handed alpha
Helix 105	105	F	383	386	Right-handed 310
Helix 106	106	F	387	391	Right-handed 310
Helix 107	107	F	393	414	Right-handed alpha

There are 11 sheets in PDB entry 4L04. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	43	first strand
Strand 2	A	6	14	parallel
Strand 3	A	69	72	parallel
Strand 4	A	303	307	parallel
Strand 5	A	291	296	anti-parallel
Strand 6	A	106	111	anti-parallel
Strand 7	A	128	133	anti-parallel
Strand 8	A	265	269	parallel
Strand 9	A	207	211	parallel
Strand 10	A	246	250	parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	146	first strand
Strand 2	A	177	185	anti-parallel
Strand 3	B	177	185	anti-parallel
Strand 4	B	142	146	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	172	first strand
Strand 2	A	150	158	anti-parallel
Strand 3	B	150	158	anti-parallel
Strand 4	B	163	172	anti-parallel
Strand 5	C	163	172	anti-parallel
Strand 6	C	150	158	anti-parallel
Strand 7	D	150	158	anti-parallel
Strand 8	D	165	172	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	43	first strand
Strand 2	B	5	14	parallel
Strand 3	B	69	72	parallel
Strand 4	B	303	307	parallel
Strand 5	B	291	296	anti-parallel
Strand 6	B	106	111	anti-parallel
Strand 7	B	128	133	anti-parallel
Strand 8	B	265	269	parallel
Strand 9	B	207	211	parallel
Strand 10	B	246	250	parallel

Back to list of sheets
Back to top of page

There are 10 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	43	first strand
Strand 2	C	5	14	parallel
Strand 3	C	69	72	parallel
Strand 4	C	303	307	parallel
Strand 5	C	291	296	anti-parallel
Strand 6	C	106	111	anti-parallel
Strand 7	C	128	133	anti-parallel
Strand 8	C	265	269	parallel
Strand 9	C	207	211	parallel
Strand 10	C	246	250	parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	146	first strand
Strand 2	C	177	185	anti-parallel
Strand 3	D	177	185	anti-parallel
Strand 4	D	142	146	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	43	first strand
Strand 2	D	5	14	parallel
Strand 3	D	69	72	parallel
Strand 4	D	303	307	parallel
Strand 5	D	291	296	anti-parallel
Strand 6	D	106	111	anti-parallel
Strand 7	D	128	133	anti-parallel
Strand 8	D	265	269	parallel
Strand 9	D	207	211	parallel
Strand 10	D	246	250	parallel

Back to list of sheets
Back to top of page

There are 10 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	43	first strand
Strand 2	E	5	14	parallel
Strand 3	E	69	72	parallel
Strand 4	E	303	306	parallel
Strand 5	E	291	296	anti-parallel
Strand 6	E	106	111	anti-parallel
Strand 7	E	128	133	anti-parallel
Strand 8	E	265	269	parallel
Strand 9	E	207	211	parallel
Strand 10	E	246	250	parallel

Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	146	first strand
Strand 2	E	177	185	anti-parallel
Strand 3	F	177	185	anti-parallel
Strand 4	F	142	146	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	172	first strand
Strand 2	E	150	158	anti-parallel
Strand 3	F	150	158	anti-parallel
Strand 4	F	165	172	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	43	first strand
Strand 2	F	5	14	parallel
Strand 3	F	69	72	parallel
Strand 4	F	303	307	parallel
Strand 5	F	291	296	anti-parallel
Strand 6	F	106	111	anti-parallel
Strand 7	F	129	133	anti-parallel
Strand 8	F	266	269	parallel
Strand 9	F	207	211	parallel
Strand 10	F	246	250	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4L04

Analysis of interatomic Contacts of Structural Units in PDB entry:
4L04