Analysis of interatomic Contacts of Structural Units in PDB entry:
4L06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4L06 entry

There are 4 chains in PDB entry 4L06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	SER 415
B	LYS 3	LEU 414
C	LYS 3	LYS 413
D	LYS 4	LEU 44

There are108 helices in PDB entry 4L06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	16	31	Right-handed alpha
Helix 2	2	A	45	52	Right-handed alpha
Helix 3	3	A	54	68	Right-handed alpha
Helix 4	4	A	79	87	Right-handed alpha
Helix 5	5	A	94	104	Right-handed alpha
Helix 6	6	A	136	141	Right-handed 310
Helix 7	7	A	186	204	Right-handed alpha
Helix 8	8	A	218	234	Right-handed alpha
Helix 9	9	A	235	242	Right-handed alpha
Helix 10	10	A	251	261	Right-handed alpha
Helix 11	11	A	270	285	Right-handed alpha
Helix 12	12	A	312	321	Right-handed alpha
Helix 13	13	A	329	348	Right-handed alpha
Helix 14	14	A	349	369	Right-handed alpha
Helix 15	15	A	373	382	Right-handed alpha
Helix 16	16	A	383	386	Right-handed 310
Helix 17	17	A	387	391	Right-handed 310
Helix 18	18	A	393	414	Right-handed alpha
Helix 19	19	B	16	30	Right-handed alpha
Helix 20	20	B	31	33	Right-handed 310
Helix 21	21	B	45	52	Right-handed alpha
Helix 22	22	B	54	68	Right-handed alpha
Helix 23	23	B	79	87	Right-handed alpha
Helix 24	24	B	94	104	Right-handed alpha
Helix 25	25	B	136	141	Right-handed 310
Helix 26	26	B	186	204	Right-handed alpha
Helix 27	27	B	218	234	Right-handed alpha
Helix 28	28	B	235	242	Right-handed alpha
Helix 29	29	B	251	261	Right-handed alpha
Helix 30	30	B	270	285	Right-handed alpha
Helix 31	31	B	312	320	Right-handed alpha
Helix 32	32	B	329	348	Right-handed alpha
Helix 33	33	B	349	369	Right-handed alpha
Helix 34	34	B	373	382	Right-handed alpha
Helix 35	35	B	383	386	Right-handed 310
Helix 36	36	B	387	391	Right-handed 310
Helix 37	37	B	393	414	Right-handed alpha
Helix 38	38	C	16	30	Right-handed alpha
Helix 39	39	C	45	52	Right-handed alpha
Helix 40	40	C	54	68	Right-handed alpha
Helix 41	41	C	79	87	Right-handed alpha
Helix 42	42	C	94	104	Right-handed alpha
Helix 43	43	C	136	141	Right-handed 310
Helix 44	44	C	186	204	Right-handed alpha
Helix 45	45	C	218	234	Right-handed alpha
Helix 46	46	C	235	242	Right-handed alpha
Helix 47	47	C	251	261	Right-handed alpha
Helix 48	48	C	270	285	Right-handed alpha
Helix 49	49	C	312	321	Right-handed alpha
Helix 50	50	C	329	348	Right-handed alpha
Helix 51	51	C	349	369	Right-handed alpha
Helix 52	52	C	373	382	Right-handed alpha
Helix 53	53	C	383	386	Right-handed 310
Helix 54	54	C	387	391	Right-handed 310
Helix 55	55	C	393	412	Right-handed alpha
Helix 56	56	D	17	29	Right-handed alpha
Helix 57	57	D	45	53	Right-handed alpha
Helix 58	58	D	54	68	Right-handed alpha
Helix 59	59	D	79	87	Right-handed alpha
Helix 60	60	D	94	104	Right-handed alpha
Helix 61	61	D	186	204	Right-handed alpha
Helix 62	62	D	218	234	Right-handed alpha
Helix 63	63	D	235	242	Right-handed alpha
Helix 64	64	D	251	261	Right-handed alpha
Helix 65	65	D	270	285	Right-handed alpha
Helix 66	66	D	287	289	Right-handed 310
Helix 67	67	D	312	321	Right-handed alpha
Helix 68	68	D	329	348	Right-handed alpha
Helix 69	69	D	349	369	Right-handed alpha
Helix 70	70	D	373	382	Right-handed alpha
Helix 71	71	D	387	391	Right-handed 310
Helix 72	72	D	393	411	Right-handed alpha
Helix 73	73	E	16	30	Right-handed alpha
Helix 74	74	E	45	52	Right-handed alpha
Helix 75	75	E	54	68	Right-handed alpha
Helix 76	76	E	79	87	Right-handed alpha
Helix 77	77	E	94	104	Right-handed alpha
Helix 78	78	E	136	141	Right-handed 310
Helix 79	79	E	186	204	Right-handed alpha
Helix 80	80	E	218	234	Right-handed alpha
Helix 81	81	E	235	242	Right-handed alpha
Helix 82	82	E	251	261	Right-handed alpha
Helix 83	83	E	270	285	Right-handed alpha
Helix 84	84	E	312	321	Right-handed alpha
Helix 85	85	E	329	348	Right-handed alpha
Helix 86	86	E	349	369	Right-handed alpha
Helix 87	87	E	373	382	Right-handed alpha
Helix 88	88	E	383	386	Right-handed 310
Helix 89	89	E	387	391	Right-handed 310
Helix 90	90	E	393	414	Right-handed alpha
Helix 91	91	F	16	30	Right-handed alpha
Helix 92	92	F	45	52	Right-handed alpha
Helix 93	93	F	54	68	Right-handed alpha
Helix 94	94	F	79	87	Right-handed alpha
Helix 95	95	F	94	104	Right-handed alpha
Helix 96	96	F	136	141	Right-handed 310
Helix 97	97	F	186	204	Right-handed alpha
Helix 98	98	F	218	234	Right-handed alpha
Helix 99	99	F	235	242	Right-handed alpha
Helix 100	100	F	251	260	Right-handed alpha
Helix 101	101	F	270	285	Right-handed alpha
Helix 102	102	F	287	289	Right-handed 310
Helix 103	103	F	312	321	Right-handed alpha
Helix 104	104	F	329	348	Right-handed alpha
Helix 105	105	F	349	369	Right-handed alpha
Helix 106	106	F	373	382	Right-handed alpha
Helix 107	107	F	387	391	Right-handed 310
Helix 108	108	F	393	413	Right-handed alpha

There are 11 sheets in PDB entry 4L06. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	43	first strand
Strand 2	A	5	14	parallel
Strand 3	A	69	72	parallel
Strand 4	A	303	306	parallel
Strand 5	A	291	296	anti-parallel
Strand 6	A	106	111	anti-parallel
Strand 7	A	128	133	anti-parallel
Strand 8	A	265	269	parallel
Strand 9	A	207	211	parallel
Strand 10	A	246	250	parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	146	first strand
Strand 2	A	177	185	anti-parallel
Strand 3	B	177	185	anti-parallel
Strand 4	B	142	146	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	172	first strand
Strand 2	B	150	158	anti-parallel
Strand 3	A	150	158	anti-parallel
Strand 4	A	163	172	anti-parallel
Strand 5	C	163	172	anti-parallel
Strand 6	C	150	158	anti-parallel
Strand 7	D	150	158	anti-parallel
Strand 8	D	165	172	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	43	first strand
Strand 2	B	5	14	parallel
Strand 3	B	69	72	parallel
Strand 4	B	303	306	parallel
Strand 5	B	291	296	anti-parallel
Strand 6	B	106	111	anti-parallel
Strand 7	B	128	133	anti-parallel
Strand 8	B	265	269	parallel
Strand 9	B	207	211	parallel
Strand 10	B	246	250	parallel

Back to list of sheets
Back to top of page

There are 10 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	43	first strand
Strand 2	C	5	14	parallel
Strand 3	C	69	72	parallel
Strand 4	C	303	306	parallel
Strand 5	C	291	296	anti-parallel
Strand 6	C	106	111	anti-parallel
Strand 7	C	129	133	anti-parallel
Strand 8	C	266	269	parallel
Strand 9	C	207	211	parallel
Strand 10	C	246	250	parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	146	first strand
Strand 2	C	177	185	anti-parallel
Strand 3	D	177	185	anti-parallel
Strand 4	D	142	146	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	43	first strand
Strand 2	D	5	14	parallel
Strand 3	D	70	72	parallel
Strand 4	D	303	306	parallel
Strand 5	D	291	296	anti-parallel
Strand 6	D	106	111	anti-parallel
Strand 7	D	128	133	anti-parallel
Strand 8	D	265	269	parallel
Strand 9	D	207	211	parallel
Strand 10	D	246	250	parallel

Back to list of sheets
Back to top of page

There are 10 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	43	first strand
Strand 2	E	5	14	parallel
Strand 3	E	69	72	parallel
Strand 4	E	303	306	parallel
Strand 5	E	291	296	anti-parallel
Strand 6	E	106	111	anti-parallel
Strand 7	E	128	133	anti-parallel
Strand 8	E	265	269	parallel
Strand 9	E	207	211	parallel
Strand 10	E	246	250	parallel

Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	146	first strand
Strand 2	E	177	185	anti-parallel
Strand 3	F	177	185	anti-parallel
Strand 4	F	142	146	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	172	first strand
Strand 2	E	150	158	anti-parallel
Strand 3	F	150	158	anti-parallel
Strand 4	F	165	172	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	43	first strand
Strand 2	F	5	14	parallel
Strand 3	F	69	72	parallel
Strand 4	F	303	306	parallel
Strand 5	F	291	296	anti-parallel
Strand 6	F	106	111	anti-parallel
Strand 7	F	128	133	anti-parallel
Strand 8	F	265	269	parallel
Strand 9	F	207	211	parallel
Strand 10	F	246	250	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4L06

Analysis of interatomic Contacts of Structural Units in PDB entry:
4L06