Analysis of interatomic Contacts of Structural Units in PDB entry:
4L0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4L0J entry

There is 1 chain in PDB entry 4L0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 575ALA 790
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 4L0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
575 593Right-handed alpha
Helix 2
2
A
603 621Right-handed alpha
Helix 3
3
A
646 650Right-handed 310
Helix 4
4
A
696 698Right-handed 310
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There are 3 sheets in PDB entry 4L0J. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 600first strand
Strand 2
A
787 789anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 637first strand
Strand 2
A
702 712anti-parallel
Strand 3
A
655 660anti-parallel
Strand 4
A
665 675anti-parallel
Strand 5
A
680 684anti-parallel
Strand 6
A
690 694anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 758first strand
Strand 2
A
745 748anti-parallel
Strand 3
A
734 740anti-parallel
Strand 4
A
717 720anti-parallel
Strand 5
A
770 772anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il