Analysis of interatomic Contacts of Structural Units in PDB entry:
4L0L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4L0L entry

There is 1 chain in PDB entry 4L0L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 53ALA 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4L0L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
85 90Right-handed alpha
Helix 2
2
A
91 94Right-handed 310
Helix 3
3
A
95 103Right-handed alpha
Helix 4
4
A
106 117Right-handed alpha
Helix 5
5
A
130 140Right-handed alpha
Helix 6
6
A
157 160Right-handed 310
Helix 7
7
A
161 166Right-handed alpha
Helix 8
8
A
177 182Right-handed alpha
Helix 9
9
A
182 188Right-handed alpha
Helix 10
10
A
224 243Right-handed alpha
Helix 11
11
A
283 288Right-handed alpha
Helix 12
12
A
292 295Right-handed 310
Helix 13
13
A
296 307Right-handed alpha
Helix 14
14
A
342 348Right-handed alpha
Helix 15
15
A
350 362Right-handed alpha
Helix 16
16
A
362 373Right-handed alpha
Helix 17
17
A
398 407Right-handed alpha
Helix 18
18
A
414 427Right-handed alpha
Helix 19
19
A
450 467Right-handed alpha
Helix 20
20
A
471 475Right-handed 310
Helix 21
21
A
533 538Right-handed alpha
Helix 22
22
A
538 553Right-handed alpha
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There are 8 sheets in PDB entry 4L0L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 129first strand
Strand 2
A
72 84anti-parallel
Strand 3
A
145 154anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 129first strand
Strand 2
A
72 84anti-parallel
Strand 3
A
65 66anti-parallel
Strand 4
A
219 220parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
174 176anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
205 206anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 265first strand
Strand 2
A
246 253anti-parallel
Strand 3
A
518 525anti-parallel
Strand 4
A
503 511anti-parallel
Strand 5
A
482 489anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
339 341anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 325first strand
Strand 2
A
328 331anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 431first strand
Strand 2
A
446 447anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il