Analysis of interatomic Contacts of Structural Units in PDB entry:
4L5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4L5J entry

There are 4 chains in PDB entry 4L5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 10SER 317
B
 GLU 10SER 317
C
 GLU 10SER 317
D
 GLU 10SER 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 71 helices in PDB entry 4L5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
34 41Right-handed alpha
Helix 3
3
A
43 58Right-handed alpha
Helix 4
4
A
66 82Right-handed alpha
Helix 5
5
A
97 112Right-handed alpha
Helix 6
6
A
125 135Right-handed alpha
Helix 7
7
A
135 142Right-handed alpha
Helix 8
8
A
152 155Right-handed 310
Helix 9
9
A
156 161Right-handed alpha
Helix 10
10
A
180 188Right-handed alpha
Helix 11
11
A
190 202Right-handed alpha
Helix 12
12
A
214 218Right-handed 310
Helix 13
13
A
219 224Right-handed alpha
Helix 14
14
A
228 238Right-handed alpha
Helix 15
15
A
259 265Right-handed 310
Helix 16
16
A
269 274Right-handed alpha
Helix 17
17
A
285 287Right-handed 310
Helix 18
18
A
288 298Right-handed alpha
Helix 19
19
A
308 317Right-handed alpha
Helix 20
20
B
14 28Right-handed alpha
Helix 21
21
B
43 58Right-handed alpha
Helix 22
22
B
71 83Right-handed alpha
Helix 23
23
B
97 114Right-handed alpha
Helix 24
24
B
125 142Right-handed alpha
Helix 25
25
B
152 155Right-handed 310
Helix 26
26
B
156 162Right-handed alpha
Helix 27
27
B
180 189Right-handed alpha
Helix 28
28
B
190 202Right-handed alpha
Helix 29
29
B
214 218Right-handed 310
Helix 30
30
B
219 224Right-handed alpha
Helix 31
31
B
228 238Right-handed alpha
Helix 32
32
B
260 264Right-handed 310
Helix 33
33
B
269 274Right-handed alpha
Helix 34
34
B
288 298Right-handed alpha
Helix 35
35
B
308 317Right-handed alpha
Helix 36
36
C
14 28Right-handed alpha
Helix 37
37
C
34 40Right-handed alpha
Helix 38
38
C
43 58Right-handed alpha
Helix 39
39
C
67 82Right-handed alpha
Helix 40
40
C
97 112Right-handed alpha
Helix 41
41
C
125 135Right-handed alpha
Helix 42
42
C
135 142Right-handed alpha
Helix 43
43
C
152 155Right-handed 310
Helix 44
44
C
156 161Right-handed alpha
Helix 45
45
C
180 188Right-handed alpha
Helix 46
46
C
190 202Right-handed alpha
Helix 47
47
C
214 218Right-handed 310
Helix 48
48
C
219 224Right-handed alpha
Helix 49
49
C
228 238Right-handed alpha
Helix 50
50
C
259 265Right-handed 310
Helix 51
51
C
269 274Right-handed alpha
Helix 52
52
C
285 287Right-handed 310
Helix 53
53
C
288 298Right-handed alpha
Helix 54
54
C
308 317Right-handed alpha
Helix 55
55
D
14 29Right-handed alpha
Helix 56
56
D
34 40Right-handed alpha
Helix 57
57
D
43 58Right-handed alpha
Helix 58
58
D
71 83Right-handed alpha
Helix 59
59
D
97 114Right-handed alpha
Helix 60
60
D
125 142Right-handed alpha
Helix 61
61
D
152 155Right-handed 310
Helix 62
62
D
156 162Right-handed alpha
Helix 63
63
D
180 188Right-handed alpha
Helix 64
64
D
190 202Right-handed alpha
Helix 65
65
D
214 218Right-handed 310
Helix 66
66
D
219 224Right-handed alpha
Helix 67
67
D
228 238Right-handed alpha
Helix 68
68
D
260 264Right-handed 310
Helix 69
69
D
269 274Right-handed alpha
Helix 70
70
D
288 298Right-handed alpha
Helix 71
71
D
308 317Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 4L5J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
D
60 64anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
303 307parallel
Strand 3
A
278 282parallel
Strand 4
A
205 208parallel
Strand 5
A
119 122parallel
Strand 6
A
145 148parallel
Strand 7
A
169 170parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
240 244anti-parallel
Strand 3
A
247 250anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 64first strand
Strand 2
C
60 64anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 90first strand
Strand 2
B
303 307parallel
Strand 3
B
278 282parallel
Strand 4
B
205 208parallel
Strand 5
B
119 122parallel
Strand 6
B
145 148parallel
Strand 7
B
169 170parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 212first strand
Strand 2
B
242 244anti-parallel
Strand 3
B
247 249anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 90first strand
Strand 2
C
303 307parallel
Strand 3
C
278 282parallel
Strand 4
C
205 208parallel
Strand 5
C
119 122parallel
Strand 6
C
145 148parallel
Strand 7
C
169 170parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
211 212first strand
Strand 2
C
240 244anti-parallel
Strand 3
C
247 250anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 90first strand
Strand 2
D
303 307parallel
Strand 3
D
278 282parallel
Strand 4
D
205 208parallel
Strand 5
D
119 122parallel
Strand 6
D
145 148parallel
Strand 7
D
169 170parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
211 212first strand
Strand 2
D
242 244anti-parallel
Strand 3
D
247 249anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il