Analysis of interatomic Contacts of Structural Units in PDB entry:
4L5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4L5R entry

There are 3 chains in PDB entry 4L5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 THR 46GLU 243
A
 G 1 G 20
B
 G 1 G 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 4L5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
100 107Right-handed 310
Helix 2
2
C
137 141Right-handed 310
Helix 3
3
C
145 154Right-handed alpha
Helix 4
4
C
157 162Right-handed alpha
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There are 3 sheets in PDB entry 4L5R. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 58first strand
Strand 2
C
118 121anti-parallel
Strand 3
C
124 127anti-parallel
Strand 4
C
93 98parallel
Strand 5
C
80 88anti-parallel
Strand 6
C
73 75anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 58first strand
Strand 2
C
118 121anti-parallel
Strand 3
C
124 127anti-parallel
Strand 4
C
93 98parallel
Strand 5
C
80 88anti-parallel
Strand 6
C
62 69anti-parallel
Strand 7
C
112 116anti-parallel
Strand 8
C
132 135anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
239 242first strand
Strand 2
C
216 224anti-parallel
Strand 3
C
231 233anti-parallel
Strand 4
C
196 201parallel
Strand 5
C
186 191anti-parallel
Strand 6
C
169 181anti-parallel
Strand 7
C
216 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il