Analysis of interatomic Contacts of Structural Units in PDB entry:
4L79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4L79 entry

There are 2 chains in PDB entry 4L79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5ASP 744
B
 ASP 3LYS 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 4L79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed 310
Helix 2
2
A
27 41Right-handed alpha
Helix 3
3
A
65 73Right-handed alpha
Helix 4
4
A
83 99Right-handed alpha
Helix 5
5
A
111 129Right-handed alpha
Helix 6
6
A
132 145Right-handed alpha
Helix 7
7
A
145 153Right-handed alpha
Helix 8
8
A
192 197Right-handed alpha
Helix 9
9
A
205 215Right-handed alpha
Helix 10
10
A
216 223Right-handed alpha
Helix 11
11
A
228 232Right-handed 310
Helix 12
12
A
246 261Right-handed alpha
Helix 13
13
A
264 282Right-handed alpha
Helix 14
14
A
303 314Right-handed alpha
Helix 15
15
A
316 325Right-handed alpha
Helix 16
16
A
341 371Right-handed alpha
Helix 17
17
A
398 430Right-handed alpha
Helix 18
18
A
441 451Right-handed alpha
Helix 19
19
A
455 466Right-handed alpha
Helix 20
20
A
471 483Right-handed alpha
Helix 21
21
A
525 531Right-handed alpha
Helix 22
22
A
535 544Right-handed alpha
Helix 23
23
A
547 554Right-handed alpha
Helix 24
24
A
555 558Right-handed 310
Helix 25
25
A
569 587Right-handed alpha
Helix 26
26
A
608 620Right-handed alpha
Helix 27
27
A
620 630Right-handed alpha
Helix 28
28
A
638 646Right-handed alpha
Helix 29
29
A
659 671Right-handed alpha
Helix 30
30
A
689 730Right-handed alpha
Helix 31
31
A
730 738Right-handed alpha
Helix 32
32
B
6 20Right-handed alpha
Helix 33
33
B
32 40Right-handed alpha
Helix 34
34
B
45 57Right-handed alpha
Helix 35
35
B
66 75Right-handed alpha
Helix 36
36
B
82 93Right-handed alpha
Helix 37
37
B
102 113Right-handed alpha
Helix 38
38
B
118 130Right-handed alpha
Helix 39
39
B
138 147Right-handed alpha
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There are 7 sheets in PDB entry 4L79. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
51 55anti-parallel
Strand 3
A
589 596parallel
Strand 4
A
102 108parallel
Strand 5
A
381 387parallel
Strand 6
A
167 174anti-parallel
Strand 7
A
180 188anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
163 164anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
299 300anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
337 339anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 490first strand
Strand 2
A
509 514anti-parallel
Strand 3
A
517 522anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 637first strand
Strand 2
A
684 687anti-parallel
Strand 3
A
678 680anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
63 65anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il