Analysis of interatomic Contacts of Structural Units in PDB entry:
4L80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4L80 entry

There are 6 chains in PDB entry 4L80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2TYR 346
B
 ARG 2LEU 348
C
 ARG 2LEU 348
D
 ARG 2LEU 348
E
 ARG 2LEU 348
F
 ARG 2LEU 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 95 helices in PDB entry 4L80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 9Right-handed alpha
Helix 2
2
A
38 50Right-handed alpha
Helix 3
3
A
64 66Right-handed 310
Helix 4
4
A
67 81Right-handed alpha
Helix 5
5
A
100 113Right-handed alpha
Helix 6
6
A
126 144Right-handed alpha
Helix 7
7
A
158 164Right-handed alpha
Helix 8
8
A
164 170Right-handed alpha
Helix 9
9
A
181 190Right-handed alpha
Helix 10
10
A
224 238Right-handed alpha
Helix 11
11
A
252 267Right-handed alpha
Helix 12
12
A
277 286Right-handed alpha
Helix 13
13
A
289 303Right-handed alpha
Helix 14
14
A
319 337Right-handed alpha
Helix 15
15
A
340 345Right-handed alpha
Helix 16
16
B
4 9Right-handed alpha
Helix 17
17
B
38 44Right-handed alpha
Helix 18
18
B
44 50Right-handed alpha
Helix 19
19
B
64 66Right-handed 310
Helix 20
20
B
67 82Right-handed alpha
Helix 21
21
B
100 113Right-handed alpha
Helix 22
22
B
126 144Right-handed alpha
Helix 23
23
B
158 164Right-handed alpha
Helix 24
24
B
164 170Right-handed alpha
Helix 25
25
B
181 190Right-handed alpha
Helix 26
26
B
224 238Right-handed alpha
Helix 27
27
B
252 267Right-handed alpha
Helix 28
28
B
277 286Right-handed alpha
Helix 29
29
B
289 303Right-handed alpha
Helix 30
30
B
319 337Right-handed alpha
Helix 31
31
B
339 347Right-handed alpha
Helix 32
32
C
4 9Right-handed alpha
Helix 33
33
C
38 50Right-handed alpha
Helix 34
34
C
64 66Right-handed 310
Helix 35
35
C
67 82Right-handed alpha
Helix 36
36
C
100 113Right-handed alpha
Helix 37
37
C
126 144Right-handed alpha
Helix 38
38
C
158 164Right-handed alpha
Helix 39
39
C
164 170Right-handed alpha
Helix 40
40
C
181 190Right-handed alpha
Helix 41
41
C
224 238Right-handed alpha
Helix 42
42
C
252 267Right-handed alpha
Helix 43
43
C
277 286Right-handed alpha
Helix 44
44
C
289 303Right-handed alpha
Helix 45
45
C
319 337Right-handed alpha
Helix 46
46
C
339 347Right-handed alpha
Helix 47
47
D
4 9Right-handed alpha
Helix 48
48
D
38 43Right-handed alpha
Helix 49
49
D
44 50Right-handed alpha
Helix 50
50
D
64 66Right-handed 310
Helix 51
51
D
67 82Right-handed alpha
Helix 52
52
D
100 113Right-handed alpha
Helix 53
53
D
126 144Right-handed alpha
Helix 54
54
D
158 164Right-handed alpha
Helix 55
55
D
164 170Right-handed alpha
Helix 56
56
D
181 190Right-handed alpha
Helix 57
57
D
224 238Right-handed alpha
Helix 58
58
D
252 267Right-handed alpha
Helix 59
59
D
277 286Right-handed alpha
Helix 60
60
D
289 303Right-handed alpha
Helix 61
61
D
319 337Right-handed alpha
Helix 62
62
D
339 347Right-handed alpha
Helix 63
63
E
4 9Right-handed alpha
Helix 64
64
E
38 50Right-handed alpha
Helix 65
65
E
64 66Right-handed 310
Helix 66
66
E
67 82Right-handed alpha
Helix 67
67
E
100 113Right-handed alpha
Helix 68
68
E
114 116Right-handed 310
Helix 69
69
E
126 144Right-handed alpha
Helix 70
70
E
158 164Right-handed alpha
Helix 71
71
E
164 170Right-handed alpha
Helix 72
72
E
181 190Right-handed alpha
Helix 73
73
E
224 238Right-handed alpha
Helix 74
74
E
252 267Right-handed alpha
Helix 75
75
E
275 277Right-handed 310
Helix 76
76
E
278 286Right-handed alpha
Helix 77
77
E
289 303Right-handed alpha
Helix 78
78
E
319 337Right-handed alpha
Helix 79
79
E
339 347Right-handed alpha
Helix 80
80
F
4 9Right-handed alpha
Helix 81
81
F
38 43Right-handed alpha
Helix 82
82
F
44 50Right-handed alpha
Helix 83
83
F
64 66Right-handed 310
Helix 84
84
F
67 82Right-handed alpha
Helix 85
85
F
100 113Right-handed alpha
Helix 86
86
F
126 144Right-handed alpha
Helix 87
87
F
158 164Right-handed alpha
Helix 88
88
F
164 170Right-handed alpha
Helix 89
89
F
181 190Right-handed alpha
Helix 90
90
F
224 238Right-handed alpha
Helix 91
91
F
252 267Right-handed alpha
Helix 92
92
F
277 286Right-handed alpha
Helix 93
93
F
289 303Right-handed alpha
Helix 94
94
F
319 337Right-handed alpha
Helix 95
95
F
339 347Right-handed alpha
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There are 18 sheets in PDB entry 4L80. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
54 58parallel
Strand 3
A
88 92parallel
Strand 4
A
118 121parallel
Strand 5
A
151 156parallel
Strand 6
A
175 180parallel
Strand 7
A
241 244parallel
Strand 8
A
270 273parallel
Strand 9
A
30 34parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
218 220anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 312first strand
Strand 2
A
315 318anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
54 58parallel
Strand 3
B
88 92parallel
Strand 4
B
118 121parallel
Strand 5
B
151 156parallel
Strand 6
B
175 180parallel
Strand 7
B
241 244parallel
Strand 8
B
270 273parallel
Strand 9
B
30 34parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 206first strand
Strand 2
B
218 220anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 312first strand
Strand 2
B
315 318anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 34first strand
Strand 2
C
54 58parallel
Strand 3
C
88 92parallel
Strand 4
C
118 121parallel
Strand 5
C
151 156parallel
Strand 6
C
175 180parallel
Strand 7
C
241 244parallel
Strand 8
C
270 273parallel
Strand 9
C
30 34parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 206first strand
Strand 2
C
218 220anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
309 312first strand
Strand 2
C
315 318anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 34first strand
Strand 2
D
54 58parallel
Strand 3
D
88 92parallel
Strand 4
D
118 121parallel
Strand 5
D
151 156parallel
Strand 6
D
175 180parallel
Strand 7
D
241 244parallel
Strand 8
D
270 273parallel
Strand 9
D
30 34parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
204 206first strand
Strand 2
D
218 220anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
309 312first strand
Strand 2
D
315 318anti-parallel
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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
30 34first strand
Strand 2
E
54 58parallel
Strand 3
E
88 92parallel
Strand 4
E
118 121parallel
Strand 5
E
151 156parallel
Strand 6
E
175 180parallel
Strand 7
E
241 244parallel
Strand 8
E
270 273parallel
Strand 9
E
30 34parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
204 206first strand
Strand 2
E
218 220anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
309 312first strand
Strand 2
E
315 318anti-parallel
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There are 9 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
30 34first strand
Strand 2
F
54 58parallel
Strand 3
F
88 92parallel
Strand 4
F
118 121parallel
Strand 5
F
151 156parallel
Strand 6
F
175 180parallel
Strand 7
F
241 244parallel
Strand 8
F
270 273parallel
Strand 9
F
30 34parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
204 206first strand
Strand 2
F
218 220anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
309 312first strand
Strand 2
F
315 318anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il