Analysis of interatomic Contacts of Structural Units in PDB entry:
4L82


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4L82 entry

There are 4 chains in PDB entry 4L82 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5GLN 160
B
 ALA -6GLN 160
C
 VAL 5GLN 160
D
 VAL 5GLN 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4L82. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 15Right-handed alpha
Helix 2
2
A
60 67Right-handed alpha
Helix 3
3
A
79 88Right-handed alpha
Helix 4
4
B
6 15Right-handed alpha
Helix 5
5
B
60 67Right-handed alpha
Helix 6
6
B
79 88Right-handed alpha
Helix 7
7
C
6 15Right-handed alpha
Helix 8
8
C
60 67Right-handed alpha
Helix 9
9
C
76 78Right-handed 310
Helix 10
10
C
79 88Right-handed alpha
Helix 11
11
D
6 15Right-handed alpha
Helix 12
12
D
60 67Right-handed alpha
Helix 13
13
D
79 88Right-handed alpha
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There are 12 sheets in PDB entry 4L82. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
150 152anti-parallel
Strand 3
A
155 157anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
22 28anti-parallel
Strand 3
A
69 74anti-parallel
Strand 4
A
115 127anti-parallel
Strand 5
A
130 142anti-parallel
Strand 6
A
49 55anti-parallel
Strand 7
A
41 44anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
108 110anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
149 152anti-parallel
Strand 3
B
155 158anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 37first strand
Strand 2
B
22 27anti-parallel
Strand 3
B
69 74anti-parallel
Strand 4
B
115 127anti-parallel
Strand 5
B
130 142anti-parallel
Strand 6
B
49 55anti-parallel
Strand 7
B
41 44anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
108 110anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 20first strand
Strand 2
C
150 152anti-parallel
Strand 3
C
155 157anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 37first strand
Strand 2
C
22 28anti-parallel
Strand 3
C
69 74anti-parallel
Strand 4
C
115 127anti-parallel
Strand 5
C
130 142anti-parallel
Strand 6
C
49 55anti-parallel
Strand 7
C
41 44anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 101first strand
Strand 2
C
108 110anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 20first strand
Strand 2
D
150 152anti-parallel
Strand 3
D
155 157anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 37first strand
Strand 2
D
22 28anti-parallel
Strand 3
D
69 74anti-parallel
Strand 4
D
115 127anti-parallel
Strand 5
D
130 142anti-parallel
Strand 6
D
49 55anti-parallel
Strand 7
D
41 44anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 101first strand
Strand 2
D
108 110anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il