Analysis of interatomic Contacts of Structural Units in PDB entry:
4L85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4L85 entry

There are 3 chains in PDB entry 4L85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1HIS 119
B
 ALA 0HIS 119
C
 GLY -1ARG 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 4L85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
33 45Right-handed alpha
Helix 3
3
A
61 68Right-handed alpha
Helix 4
4
A
83 94Right-handed alpha
Helix 5
5
A
104 117Right-handed alpha
Helix 6
6
B
16 23Right-handed alpha
Helix 7
7
B
33 45Right-handed alpha
Helix 8
8
B
57 71Right-handed alpha
Helix 9
9
B
83 93Right-handed alpha
Helix 10
10
B
104 118Right-handed alpha
Helix 11
11
C
10 24Right-handed alpha
Helix 12
12
C
33 45Right-handed alpha
Helix 13
13
C
58 69Right-handed alpha
Helix 14
14
C
83 94Right-handed alpha
Helix 15
15
C
104 117Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4L85. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
3 7parallel
Strand 3
A
48 52parallel
Strand 4
A
75 79parallel
Strand 5
A
97 100parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 31first strand
Strand 2
B
2 7parallel
Strand 3
B
48 54parallel
Strand 4
B
75 79parallel
Strand 5
B
97 100parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 31first strand
Strand 2
C
3 7parallel
Strand 3
C
48 53parallel
Strand 4
C
75 79parallel
Strand 5
C
97 100parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il