Analysis of interatomic Contacts of Structural Units in PDB entry:
4L8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4L8J entry

There is 1 chain in PDB entry 4L8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 25LYS 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4L8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
89 118Right-handed alpha
Helix 2
2
A
123 150Right-handed alpha
Helix 3
3
A
194 196Right-handed 310
Helix 4
4
A
197 203Right-handed alpha
Helix 5
5
A
214 216Right-handed 310
Helix 6
6
A
230 234Right-handed 310
Helix 7
7
A
281 285Right-handed 310
Helix 8
8
A
336 340Right-handed 310
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There are 5 sheets in PDB entry 4L8J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
278 279anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 51first strand
Strand 2
A
188 193anti-parallel
Strand 3
A
237 243anti-parallel
Strand 4
A
220 227anti-parallel
Strand 5
A
207 212anti-parallel
Strand 6
A
260 268anti-parallel
Strand 7
A
42 51anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
177 183anti-parallel
Strand 3
A
159 164anti-parallel
Strand 4
A
77 78anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
83 87anti-parallel
Strand 3
A
65 69anti-parallel
Strand 4
A
171 172anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
291 300anti-parallel
Strand 3
A
303 309anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il