Analysis of interatomic Contacts of Structural Units in PDB entry:
4LB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LB8 entry

There is 1 chain in PDB entry 4LB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 38LEU 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 4LB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 65Right-handed alpha
Helix 2
2
A
67 78Right-handed alpha
Helix 3
3
A
82 101Right-handed alpha
Helix 4
4
A
103 119Right-handed alpha
Helix 5
5
A
140 146Right-handed 310
Helix 6
6
A
167 173Right-handed alpha
Helix 7
7
A
299 303Right-handed 310
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There are 4 sheets in PDB entry 4LB8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
47 50anti-parallel
Strand 3
A
152 155parallel
Strand 4
A
158 161anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
191 195anti-parallel
Strand 3
A
199 208anti-parallel
Strand 4
A
211 221anti-parallel
Strand 5
A
226 228anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
191 195anti-parallel
Strand 3
A
199 208anti-parallel
Strand 4
A
211 221anti-parallel
Strand 5
A
274 282anti-parallel
Strand 6
A
242 246anti-parallel
Strand 7
A
255 258anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
233 240anti-parallel
Strand 3
A
287 295anti-parallel
Strand 4
A
304 310anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il