Analysis of interatomic Contacts of Structural Units in PDB entry:
4LHJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LHJ entry

There are 2 chains in PDB entry 4LHJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5PRO 263
B
 GLN 1SER 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4LHJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 34Right-handed alpha
Helix 2
2
A
53 56Right-handed 310
Helix 3
3
A
98 106Right-handed alpha
Helix 4
4
A
123 132Right-handed alpha
Helix 5
5
A
134 138Right-handed 310
Helix 6
6
A
141 156Right-handed alpha
Helix 7
7
A
161 176Right-handed alpha
Helix 8
8
A
176 182Right-handed alpha
Helix 9
9
A
182 195Right-handed alpha
Helix 10
10
A
202 221Right-handed alpha
Helix 11
11
A
247 250Right-handed 310
Helix 12
12
B
61 64Right-handed 310
Helix 13
13
B
86 90Right-handed 310
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There are 6 sheets in PDB entry 4LHJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
58 64parallel
Strand 3
A
70 76anti-parallel
Strand 4
A
82 87anti-parallel
Strand 5
A
90 93anti-parallel
Strand 6
A
114 117parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
43 44anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
240 245anti-parallel
Strand 3
A
231 234anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
115 120parallel
Strand 3
B
91 99anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
46 52anti-parallel
Strand 6
B
57 59anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
115 120parallel
Strand 3
B
91 99anti-parallel
Strand 4
B
108 111anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il