Analysis of interatomic Contacts of Structural Units in PDB entry:
4LI1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LI1 entry

There are 2 chains in PDB entry 4LI1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 30LEU 454
A
 PRO 31LEU 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 4LI1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
172 177Right-handed alpha
Helix 2
2
B
244 250Right-handed 310
Helix 3
3
B
339 345Right-handed alpha
Helix 4
4
B
450 454Right-handed 310
Helix 5
5
A
172 177Right-handed alpha
Helix 6
6
A
244 250Right-handed 310
Helix 7
7
A
339 345Right-handed alpha
Helix 8
8
A
385 389Right-handed 310
Helix 9
9
A
410 415Right-handed 310
Helix 10
10
A
449 454Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 4LI1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 19 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
43 45anti-parallel
Strand 3
B
64 66parallel
Strand 4
B
88 90parallel
Strand 5
B
112 114parallel
Strand 6
B
136 138parallel
Strand 7
B
160 162parallel
Strand 8
B
184 186parallel
Strand 9
B
208 210parallel
Strand 10
B
232 234parallel
Strand 11
B
255 257parallel
Strand 12
B
279 281parallel
Strand 13
B
303 307parallel
Strand 14
B
326 330parallel
Strand 15
B
350 352parallel
Strand 16
B
372 374parallel
Strand 17
B
396 398parallel
Strand 18
B
420 422parallel
Strand 19
B
441 443parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 195first strand
Strand 2
B
218 219parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
B
289 290parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 383first strand
Strand 2
B
406 407parallel
Back to list of sheets
Back to top of page

There are 18 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
64 66parallel
Strand 3
A
88 90parallel
Strand 4
A
112 114parallel
Strand 5
A
136 138parallel
Strand 6
A
160 162parallel
Strand 7
A
184 186parallel
Strand 8
A
208 210parallel
Strand 9
A
232 234parallel
Strand 10
A
255 257parallel
Strand 11
A
279 281parallel
Strand 12
A
303 307parallel
Strand 13
A
326 330parallel
Strand 14
A
350 352parallel
Strand 15
A
372 374parallel
Strand 16
A
396 398parallel
Strand 17
A
420 422parallel
Strand 18
A
441 443parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
98 99parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
218 219parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
289 290parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
406 407parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il