Analysis of interatomic Contacts of Structural Units in PDB entry:
4LIS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LIS entry

There are 3 chains in PDB entry 4LIS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2LEU 365
B
 SER 3LEU 365
C
 PRO 2LEU 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 4LIS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 27Right-handed alpha
Helix 2
2
A
41 52Right-handed alpha
Helix 3
3
A
64 75Right-handed alpha
Helix 4
4
A
89 94Right-handed alpha
Helix 5
5
A
96 104Right-handed alpha
Helix 6
6
A
104 119Right-handed alpha
Helix 7
7
A
130 133Right-handed 310
Helix 8
8
A
154 181Right-handed alpha
Helix 9
9
A
183 190Right-handed alpha
Helix 10
10
A
219 230Right-handed alpha
Helix 11
11
A
256 273Right-handed alpha
Helix 12
12
A
290 302Right-handed alpha
Helix 13
13
A
324 330Right-handed alpha
Helix 14
14
A
338 353Right-handed alpha
Helix 15
15
A
355 359Right-handed 310
Helix 16
16
B
13 26Right-handed alpha
Helix 17
17
B
41 52Right-handed alpha
Helix 18
18
B
64 75Right-handed alpha
Helix 19
19
B
89 94Right-handed alpha
Helix 20
20
B
96 104Right-handed alpha
Helix 21
21
B
104 118Right-handed alpha
Helix 22
22
B
130 132Right-handed 310
Helix 23
23
B
134 138Right-handed 310
Helix 24
24
B
154 181Right-handed alpha
Helix 25
25
B
183 190Right-handed alpha
Helix 26
26
B
219 228Right-handed alpha
Helix 27
27
B
256 273Right-handed alpha
Helix 28
28
B
290 302Right-handed alpha
Helix 29
29
B
324 330Right-handed alpha
Helix 30
30
B
338 353Right-handed alpha
Helix 31
31
B
355 359Right-handed 310
Helix 32
32
C
13 26Right-handed alpha
Helix 33
33
C
41 52Right-handed alpha
Helix 34
34
C
64 75Right-handed alpha
Helix 35
35
C
89 94Right-handed alpha
Helix 36
36
C
96 104Right-handed alpha
Helix 37
37
C
104 118Right-handed alpha
Helix 38
38
C
130 132Right-handed 310
Helix 39
39
C
154 181Right-handed alpha
Helix 40
40
C
183 190Right-handed alpha
Helix 41
41
C
219 228Right-handed alpha
Helix 42
42
C
256 273Right-handed alpha
Helix 43
43
C
290 302Right-handed alpha
Helix 44
44
C
324 330Right-handed alpha
Helix 45
45
C
338 353Right-handed alpha
Helix 46
46
C
355 359Right-handed 310
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There are 12 sheets in PDB entry 4LIS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
29 33parallel
Strand 3
A
5 9parallel
Strand 4
A
80 83parallel
Strand 5
A
122 128parallel
Strand 6
A
191 197parallel
Strand 7
A
277 282parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
253 255parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
307 310parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
250 251anti-parallel
Strand 3
A
319 320parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
29 33parallel
Strand 3
B
5 9parallel
Strand 4
B
80 83parallel
Strand 5
B
122 128parallel
Strand 6
B
191 197parallel
Strand 7
B
277 282parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 201first strand
Strand 2
B
250 255parallel
Strand 3
B
287 289anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 201first strand
Strand 2
B
250 255parallel
Strand 3
B
319 320parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 238first strand
Strand 2
B
307 310parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 58first strand
Strand 2
C
29 33parallel
Strand 3
C
5 9parallel
Strand 4
C
80 83parallel
Strand 5
C
122 128parallel
Strand 6
C
191 197parallel
Strand 7
C
277 282parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 201first strand
Strand 2
C
253 255parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
235 238first strand
Strand 2
C
307 310parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
288 289first strand
Strand 2
C
250 251anti-parallel
Strand 3
C
319 320parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il