Analysis of interatomic Contacts of Structural Units in PDB entry:
4LIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LIV entry

There is 1 chain in PDB entry 4LIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 36GLY 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4LIV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 50Right-handed alpha
Helix 2
2
A
70 79Right-handed alpha
Helix 3
3
A
119 123Right-handed 310
Helix 4
4
A
124 129Right-handed alpha
Helix 5
5
A
130 137Right-handed 310
Helix 6
6
A
240 255Right-handed alpha
Helix 7
7
A
277 294Right-handed alpha
Helix 8
8
A
296 307Right-handed alpha
Helix 9
9
A
323 333Right-handed alpha
Helix 10
10
A
363 373Right-handed alpha
Helix 11
11
A
377 382Right-handed alpha
Helix 12
12
A
383 386Right-handed 310
Helix 13
13
A
387 400Right-handed alpha
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There are 4 sheets in PDB entry 4LIV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
165 169anti-parallel
Strand 4
A
229 236anti-parallel
Strand 5
A
142 150anti-parallel
Strand 6
A
113 117anti-parallel
Strand 7
A
85 91anti-parallel
Strand 8
A
94 99anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 207first strand
Strand 2
A
174 179anti-parallel
Strand 3
A
221 225anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
337 339anti-parallel
Strand 3
A
403 405anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 348first strand
Strand 2
A
351 354anti-parallel
Strand 3
A
357 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il