Analysis of interatomic Contacts of Structural Units in PDB entry:
4LJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LJ2 entry

There are 2 chains in PDB entry 4LJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 363
B
 MET 1PRO 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4LJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 47Right-handed alpha
Helix 2
2
A
127 130Right-handed 310
Helix 3
3
A
131 150Right-handed alpha
Helix 4
4
A
184 200Right-handed alpha
Helix 5
5
A
225 235Right-handed alpha
Helix 6
6
A
249 254Right-handed alpha
Helix 7
7
A
323 326Right-handed 310
Helix 8
8
A
327 349Right-handed alpha
Helix 9
9
B
37 47Right-handed alpha
Helix 10
10
B
128 130Right-handed 310
Helix 11
11
B
131 150Right-handed alpha
Helix 12
12
B
172 180Right-handed 310
Helix 13
13
B
185 200Right-handed alpha
Helix 14
14
B
225 235Right-handed alpha
Helix 15
15
B
247 254Right-handed 310
Helix 16
16
B
323 327Right-handed 310
Helix 17
17
B
328 350Right-handed alpha
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There are 7 sheets in PDB entry 4LJ2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
11 15anti-parallel
Strand 3
A
22 28anti-parallel
Strand 4
A
81 86anti-parallel
Strand 5
A
66 67anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
152 160anti-parallel
Strand 3
A
205 212anti-parallel
Strand 4
A
286 292anti-parallel
Strand 5
A
240 245anti-parallel
Strand 6
B
240 245anti-parallel
Strand 7
B
286 292anti-parallel
Strand 8
B
205 212anti-parallel
Strand 9
B
152 160anti-parallel
Strand 10
B
163 164anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
280 281anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
11 15anti-parallel
Strand 3
B
22 28anti-parallel
Strand 4
B
81 86anti-parallel
Strand 5
B
66 67anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
75 76anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 277first strand
Strand 2
B
280 281anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il