Analysis of interatomic Contacts of Structural Units in PDB entry:
4LJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4LJ3 entry

There are 2 chains in PDB entry 4LJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 104LYS 359
B
 TYR 104LYS 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4LJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
109 119Right-handed alpha
Helix 2
2
A
155 158Right-handed 310
Helix 3
3
A
159 167Right-handed alpha
Helix 4
4
A
168 185Right-handed alpha
Helix 5
5
A
186 191Right-handed 310
Helix 6
6
A
202 208Right-handed alpha
Helix 7
7
A
210 223Right-handed alpha
Helix 8
8
A
242 255Right-handed alpha
Helix 9
9
A
269 277Right-handed alpha
Helix 10
10
A
285 290Right-handed alpha
Helix 11
11
A
297 310Right-handed alpha
Helix 12
12
A
323 333Right-handed alpha
Helix 13
13
A
349 356Right-handed alpha
Helix 14
14
B
109 119Right-handed alpha
Helix 15
15
B
155 158Right-handed 310
Helix 16
16
B
159 167Right-handed alpha
Helix 17
17
B
168 185Right-handed alpha
Helix 18
18
B
186 191Right-handed 310
Helix 19
19
B
202 208Right-handed alpha
Helix 20
20
B
210 223Right-handed alpha
Helix 21
21
B
242 255Right-handed alpha
Helix 22
22
B
269 277Right-handed alpha
Helix 23
23
B
285 290Right-handed alpha
Helix 24
24
B
297 311Right-handed alpha
Helix 25
25
B
323 333Right-handed alpha
Helix 26
26
B
349 356Right-handed alpha
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There are 5 sheets in PDB entry 4LJ3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
B
105 108anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
137 148anti-parallel
Strand 3
A
122 131anti-parallel
Strand 4
A
347 348anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
137 148anti-parallel
Strand 3
A
195 200parallel
Strand 4
A
227 233parallel
Strand 5
A
258 264parallel
Strand 6
A
281 284parallel
Strand 7
A
315 319parallel
Strand 8
A
337 339parallel
Strand 9
A
122 131anti-parallel
Strand 10
A
347 348anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
137 148anti-parallel
Strand 3
B
122 131anti-parallel
Strand 4
B
347 348anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
137 148anti-parallel
Strand 3
B
195 200parallel
Strand 4
B
227 233parallel
Strand 5
B
258 264parallel
Strand 6
B
281 284parallel
Strand 7
B
315 319parallel
Strand 8
B
337 339parallel
Strand 9
B
122 131anti-parallel
Strand 10
B
347 348anti-parallel
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